| The complete plastome of Centaurium erythraea subsp. majus (Hoffmanns. & Link) M.Lainz (Gentianaceae), the first chloroplast genome belonging to the Centaurium genus | Carvalho Leonardo I, Alberti A, Denoeud F, Barreto Crespo MT, Capelo J and Bustos Gaspar F | |  | | Discovery and Enzymatic Screening of Genome-Mined Microbial Levanases to Produce Second-Generation beta-(2,6)-Fructooligosaccharides: Catalytic Properties | Chen L, Hill A, Petit JL, Mariage A, de Berardinis V and Karboune S | | | | Impacts of microplastics and the associated plastisphere on physiological, biochemical, genetic expression and gut microbiota of the filter-feeder amphioxus | Cheng J, Meistertzheim AL, Leistenschneider D, Philip L, Jacquin J, Escande ML, Barbe V, Ter Halle A, Chapron L, Lartaud F, Bertrand S, Escriva H and Ghiglione JF | | | | A paralog of Pcc1 is the fifth core subunit of the KEOPS tRNA-modifying complex in Archaea | Daugeron MC, Missoury S, Da Cunha V, Lazar N, Collinet B, van Tilbeurgh H and Basta T | | | | Differential global distribution of marine picocyanobacteria gene clusters reveals distinct niche-related adaptive strategies | Dore H, Guyet U, Leconte J, Farrant GK, Alric B, Ratin M, Ostrowski M, Ferrieux M, Brillet-Gueguen L, Hoebeke M, Siltanen J, Le Corguille G, Corre E, Wincker P, Scanlan DJ, Eveillard D, Partensky F and Garczarek L | | | | Convergent evolution and horizontal gene transfer in Arctic Ocean microalgae | Dorrell RG, Kuo A, Fussy Z, Richardson EH, Salamov A, Zarevski N, Freyria NJ, Ibarbalz FM, Jenkins J, Pierella Karlusich JJ, Stecca Steindorff A, Edgar RE, Handley L, Lail K, Lipzen A, Lombard V, McFarlane J, Nef C, Novak Vanclova AM, Peng Y, Plott C, Potvin M, Vieira FRJ, Barry K, de Vargas C, Henrissat B, Pelletier E, Schmutz J, Wincker P, Dacks JB, Bowler C, Grigoriev IV and Lovejoy C | | | | Silent gene clusters encode magnetic organelle biosynthesis in a non-magnetotactic phototrophic bacterium | Dziuba MV, Paulus A, Schramm L, Awal RP, Posfai M, Monteil CL, Fouteau S, Uebe R and Schuler D | | | | Native amine dehydrogenases can catalyze the direct reduction of carbonyl compounds to alcohols in the absence of ammonia | Fossey-Jouenne A, Ducrot L, Jongkind E, Elis‚e E, Zaparucha A, Grogan G, Paul C and Vergne-Vaxelaire C | Frontiers in Catalysis 3 (), 1105948, 2023 | | | Plankton biogeography in the 21st century and impacts of climate change: advances through genomics | Fr‚mont P, Gehlen M and Jaillon O | | | | Synergistic activation of RARbeta and RARgamma nuclear receptors restores cell specialization during stem cell differentiation by hijacking RARalpha-controlled programs | Koshy A, Mathieux E, Studer F, Bramoulle A, Lieb M, Colombo BM, Gronemeyer H and Mendoza-Parra MA | | | | Oak stands along an elevation gradient have different molecular strategies for regulating bud phenology | Le Provost G, Lalanne C, Lesur I, Louvet JM, Delzon S, Kremer A, Labadie K, Aury JM, Da Silva C, Moritz T and Plomion C | | | | Methanocaldococcus lauensis sp. nov., a novel deep-sea hydrothermal vent hyperthermophilic methanogen | L'Haridon S, Goulaouic S, St John E, Fouteau S and Reysenbach A-L | | | | DNA methylation-based profiling of horse archaeological remains for age-at-death and castration | Liu X, Seguin-Orlando A, Chauvey L, Tressieres G, Schiavinato S, Tonasso-Calviere L, Aury JM, Perdereau A, Wagner S, Clavel P, Estrada O, Pan J, Ma Y, Enk J, Devault A, Klunk J, Lepetz S, Clavel B, Jiang L, Wincker P, Collin YRH, Sarkissian C and Orlando L | | | | Interspecific introgression patterns reveal the origins of worldwide cultivated bananas in New Guinea | Martin G, Cottin A, Baurens FC, Labadie K, Hervouet C, Salmon F, Paulo-de-la-Reberdiere N, Van den Houwe I, Sardos J, Aury JM, D'Hont A and Yahiaoui N | | | | A robust approach to estimate relative phytoplankton cell abundances from metagenomes | Pierella Karlusich JJ, Pelletier E, Zinger L, Lombard F, Zingone A, Colin S, Gasol JM, Dorrell RG, Henry N, Scalco E, Acinas SG, Wincker P, de Vargas C and Bowler C | | | | Distinct Energy-Coupling Factor Transporter Subunits Enable Flavin Acquisition and Extracytosolic Trafficking for Extracellular Electron Transfer in Listeria monocytogenes | Rivera-Lugo R, Huang S, Lee F, Meheust R, Iavarone AT, Sidebottom AM, Oldfield E, Portnoy DA and Light SH | | | | Analyzing Prokaryotic Transcriptomics in the Light of Genome Data with the MicroScope Platform | Roche D, Calteau A and Vallenet D | | | | Is a dissipation half-life of 5 years for chlordecone in soils of the French West Indies relevant? | Saaidi PL, Grunberger O, Samouelian A, Le Roux Y, Richard A, Devault DA, Feidt C, Benoit P, Evrard O, Imfeld G, Mouvet C and Voltz M | | | | SulfAtlas, the sulfatase database: state of the art and new developments | Stam M, Lelievre P, Hoebeke M, Corre E, Barbeyron T and Michel G | | | | Tracking population structure and phenology through time using ancient genomes from waterlogged white oak wood | Wagner S, Seguin-Orlando A, Leple JC, Leroy T, Lalanne C, Labadie K, Aury JM, Poirier S, Wincker P, Plomion C, Kremer A and Orlando L | | | | Priorities for ocean microbiome research | Abreu A, Bourgois E, Gristwood A, Trouble R, Acinas SG, Bork P, Boss E, Bowler C, Budinich M, Chaffron S, de Vargas C, Delmont TO, Eveillard D, Guidi L, Iudicone D, Kandels S, Morlon H, Lombard F, Pepperkok R, Karlusich JJP, Piganeau G, Regimbeau A, Sommeria-Klein G, Stemmann L, Sullivan MB, Sunagawa S, Wincker P, Zablocki O, Arendt D, Bilic J, Finn R, Heard E, Rouse B, Vamathevan J, Casotti R, Cancio I, Cunliffe M, Kervella AE, Kooistra W, Obst M, Pade N, Power DM, Santi I, Tsagaraki TM, Vanaverbeke J, Tara Ocean F, Tara O, European Mol Biol Lab E and European Marine Biol Resource C | | | | Providing a phylogenetic framework for trait-based analyses in brown algae: Phylogenomic tree inferred from 32 nuclear protein-coding sequences | Akita S, Vieira C, Hanyuda T, Rousseau F, Cruaud C, Couloux A, Heesch S, Cock JM and Kawai H | | | | "The complete genome sequence of elite bread wheat cultivar, ""Sonmez""" | Akpinar BA, Leroy P, Watson-Haigh N, Baumann U, Barbe V and Budak H | | | | Postglacial species arrival and diversity buildup of northern ecosystems took millennia | Alsos IG, Rijal DP, Ehrich D, Karger DN, Yoccoz NG, Heintzman PD, Brown AG, Lammers Y, Pellissier L, Alm T, Brathen KA, Coissac E, Merkel MKF, Alberti A, Denoeud F, Bakke J and PhyloNorway C | | | | Long-read and chromosome-scale assembly of the hexaploid wheat genome achieves high resolution for research and breeding | Aury JM, Engelen S, Istace B, Monat C, Lasserre-Zuber P, Belser C, Cruaud C, Rimbert H, Leroy P, Arribat S, Dufau I, Bellec A, Grimbichler D, Papon N, Paux E, Ranoux M, Alberti A, Wincker P and Choulet F | | | | Structure and Mutation of the Native Amine Dehydrogenase MATOUAmDH2 | Bennett M, Ducrot L, Vergne-Vaxelaire C and Grogan G | | | | Epigenomic and structural events preclude recombination in Brassica napus | Boideau F, Richard G, Coriton O, Huteau V, Belser C, Deniot G, Eber F, Falentin C, de Carvalho JF, Gilet M, Lode-Taburel M, Maillet L, Morice J, Trotoux G, Aury JM, Chevre AM and Rousseau-Gueutin M | | | | Oxford Nanopore and Bionano Genomics technologies evaluation for plant structural variation detection | Canaguier A, Guilbaud R, Denis E, Magdelenat G, Belser C, Istace B, Cruaud C, Wincker P, Le Paslier MC, Faivre-Rampant P and Barbe V | | | | Metatranscriptomics of cheese microbial communities: Efficiency of RNA extraction from various cheese types and of mRNA enrichment | Carbonne C, Labadie K, Cruaud C, Brun E, Barbe V and Monnet C | | | | Chelonus inanitus bracovirus encodes lineage-specific proteins and truncated immune IkappaB-like factors | Cerqueira de Araujo A, Josse T, Sibut V, Urabe M, Asadullah A, Barbe V, Nakai M, Huguet E, Periquet G and Drezen JM | | | | A Methylotrophic Bacterium Growing with the Antidiabetic Drug Metformin as Its Sole Carbon, Nitrogen and Energy Source | Chaignaud P, Gruffaz C, Borreca A, Fouteau S, Kuhn L, Masbou J, Rouy Z, Hammann P, Imfeld G, Roche D and Vuilleumier S | | | | Biodegradability under marine conditions of bio-based and petroleum-based polymers as substitutes of conventional microparticles | Cheng J, Eyheraguibel B, Jacquin J, Pujo-Pay M, Conan P, Barbe V, Hoypierres J, Deligey G, Halle AT, Bruzaud S, Ghiglione J-F and Meistertzheim A-L | | | | Sex in the city: Uncovering sex-specific management of equine resources from prehistoric times to the Modern Period in France | Clavel B, Lepetz S, Chauvey L, Schiavinato S, Tonasso-Calviere L, Liu XX, Fages A, Khan N, Seguin-Orlando A, Sarkissian CD, Clavel P, Estrada O, Alioglu D, Gaunitz C, Aury JM, Barme M, Bodu P, Olive M, Bignon-Lau O, Castel JC, Boudadi-Maligne M, Boulbes N, Bourgois A, Decanter F, Foucras S, Frere S, Gardeisen A, Jouanin G, Mela C, Morand N, Espinet AN, Perdereau A, Putelat O, Riviere J, Robin O, Salin M, Valenzuela-Lamas S, Vallet C, Yvinec JH, Wincker P and Orlando L | | | | Evidence of coupled autotrophy and heterotrophy on plastic biofilms and its influence on surrounding seawater | Conan P, Philip L, Ortega-Retuerta E, Odobel C, Duran C, Pandin C, Giraud C, Meistertzheim AL, Barbe V, Ter Hall A, Pujo-Pay M and Ghiglione JF | | | | Patterns of eukaryotic diversity from the surface to the deep-ocean sediment | Cordier T, Angeles IB, Henry N, Lejzerowicz F, Berney C, Morard R, Brandt A, Cambon-Bonavita MA, Guidi L, Lombard F, Arbizu PM, Massana R, Orejas C, Poulain J, Smith CR, Wincker P, Arnaud-Haond S, Gooday AJ, de Vargas C and Pawlowski J | | | | Selection drives convergent gene expression changes during transitions to co-sexuality in haploid sexual systems | Cossard GG, Godfroy O, Nehr Z, Cruaud C, Cock JM, Lipinska AP and Coelho SM | | | | In vitro Applications of the Terpene Mini-Path 2.0 | Couillaud J, Amouric A, Courvoisier-Dezord E, Leydet L, Schweitzer N, Rosso MN, Hage H, Loussouarn-Yvon M, Vincentelli R, Petit JL, de Berardinis V, Attolini M, Maresca M, Duquesne K and Iacazio G | | | | The expanding Asgardÿarchaea and their elusive relationships with Eukarya | Da Cunha V, Ga‹a M and Forterre P | | | | Giant Viruses Encode Actin-Related Proteins | Da Cunha V, Gaia M, Ogata H, Jaillon O, Delmont TO and Forterre P | | | | Genomic differentiation of three pico-phytoplankton species in the Mediterranean Sea | Da Silva O, Ayata SD, Ser-Giacomi E, Leconte J, Pelletier E, Fauvelot C, Madoui MA, Guidi L, Lombard F and Bittner L | | | | Genomic Instability in Somatic Hybridization between Poncirus and Citrus Species Aiming to Create New Rootstocks | Dambier D, Barantin P, Boulard G, Costantino G, Mournet P, Perdereau A, Morillon R and Ollitrault P | | | | A roadmap for the functional annotation of protein families: a community perspective | de Crecy-Lagard V, Amorin de Hegedus R, Arighi C, Babor J, Bateman A, Blaby I, Blaby-Haas C, Bridge AJ, Burley SK, Cleveland S, Colwell LJ, Conesa A, Dallago C, Danchin A, de Waard A, Deutschbauer A, Dias R, Ding Y, Fang G, Friedberg I, Gerlt J, Goldford J, Gorelik M, Gyori BM, Henry C, Hutinet G, Jaroch M, Karp PD, Kondratova L, Lu Z, Marchler-Bauer A, Martin MJ, McWhite C, Moghe GD, Monaghan P, Morgat A, Mungall CJ, Natale DA, Nelson WC, O'Donoghue S, Orengo C, O'Toole KH, Radivojac P, Reed C, Roberts RJ, Rodionov D, Rodionova IA, Rudolf JD, Saleh L, Sheynkman G, Thibaud-Nissen F, Thomas PD, Uetz P, Vallenet D, Carter EW, Weigele PR, Wood V, Wood-Charlson EM and Xu J | | | | A roadmap for the functional annotation of protein families: a community perspective | de Crecy-Lagard V, de Hegedus RA, Arighi C, Babor J, Bateman A, Blaby I, Blaby-Haas C, Bridge AJ, Burley SK, Cleveland S, Colwell LJ, Conesa A, Dallago C, Danchin A, de Waard A, Deutschbauer A, Dias R, Ding YS, Fang G, Friedberg I, Gerlt J, Goldford J, Gorelik M, Gyori BM, Henry C, Hutinet G, Jaroch M, Karp PD, Kondratova L, Lu ZY, Marchler-Bauer A, Martin MJ, McWhite C, Moghe GD, Monaghan P, Morgat A, Mungall CJ, Natale DA, Nelson WC, O'Donoghue S, Orengo C, O'Toole KH, Radivojac P, Reed C, Roberts RJ, Rodionov D, Rodionova IA, Rudolf JD, Saleh L, Sheynkman G, Thibaud-Nissen F, Thomas PD, Uetz P, Vallenet D, Carter EW, Weigele PR, Wood V, Wood-Charlson EM and Xu J | | | | Plankton Planet: A frugal, cooperative measure of aquatic life at the planetary scale | de Vargas C, Le Bescot N, Pollina T, Henry N, Romac S, Colin S, Ha‰ntjens N, Carmichael M, Berger C, Le Guen D, Decelle J, Mah‚ F, Poulain J, Malpot E, Beaumont C, Hardy M, Guiffant D, Probert I, Gruber DF, Allen AE, Gorsky G, Follows MJ, Pochon X, Troubl‚ R, Cael BB, Lombard F, Boss E, Prakash M, tPPct, Bazile R, Boss E, Bourdin G, Cael B, Casati R, Colin Sb, Vargas Cd, Gorsky G, Guiffant D, Haentjens N, Henry N, Larson A, Bescot NL, Lombard F, Mirambeau G, Moulin Cm, Oddone A, Prakash M, Prazuck C, Raimbault V, Trellu C and Trouble? R | | | | Access to the Syn diastereomers of cryptophane cages using HFIP | Della-Negra O, Cirillo Y, Brotin T, Dutasta JP, Saaidi PL, Chatelet B and Martinez A | | | | Genetic and biocatalytic basis of formate dependent growth of Escherichia coli strains evolved in continuous culture | Delmas VA, Perchat N, Monet O, Foure M, Darii E, Roche D, Dubois I, Pateau E, Perret A, Doring V and Bouzon M | | | | Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean | Delmont TO, Gaia M, Hinsinger DD, Fr‚mont P, Vanni C, Fernandez-Guerra A, Eren AM, Kourlaiev A, d'Agata L, Clayssen Q, Villar E, Labadie K, Cruaud C, Poulain J, Da Silva C, Wessner M, Noel B, Aury J-M, Sunagawa S, Acinas SG, Bork P, Karsenti E, Bowler C, Sardet C, Stemmann L, de Vargas C, Wincker P, Lescot M, Babin M, Gorsky G, Grimsley N, Guidi L, Hingamp P, Jaillon O, Kandels S, Iudicone D, Ogata H, Pesant S, Sullivan MB, Not F, Lee K-B, Boss E, Cochrane G, Follows M, Poulton N, Raes J, Sieracki M, Speich S, de Vargas C, Bowler C, Karsenti E, Pelletier E, Wincker P and Jaillon O | | | | Heterotrophic bacterial diazotrophs are more abundant than their cyanobacterial counterparts in metagenomes covering most of the sunlit ocean | Delmont TO, Pierella Karlusich JJ, Veseli I, Fuessel J, Eren AM, Foster RA, Bowler C, Wincker P and Pelletier E | | | | Genome wide association study of Escherichia coli bloodstream infection isolates identifies genetic determinants for the portal of entry but not fatal outcome | Denamur E, Condamine B, Esposito-Farese M, Royer G, Clermont O, Laouenan C, Lefort A, de Lastours V, Galardini M, Colibafi and Septicoli | | | | Diversity and ecological footprint of Global Ocean RNA viruses | Dominguez-Huerta G, Zayed AA, Wainaina JM, Guo JR, Tian FN, Pratama AA, Bolduc B, Mohssen M, Zablocki O, Pelletier E, Delage E, Alberti A, Aury JM, Carradec Q, da Silva C, Labadie K, Poulain J, Coordinators TO, Bowler C, Eveillard D, Guidi L, Karsenti E, Kuhn JH, Ogata H, Wincker P, Culley A, Chaffron S and Sullivan MB | | | | The banana genome hub: a community database for genomics in the Musaceae | Droc G, Martin G, Guignon V, Summo M, Semp‚r‚ G, Durant E, Soriano A, Baurens F-C, Cenci A, Breton C, Shah T, Aury J-M, Ge X-J, Harrison PH, Yahiaoui N, D?Hont A and Rouard M | | | | Expanding the substrate scope of native amine dehydrogenases through in silico structural exploration and targeted protein engineering | Ducrot L, Bennett M, Andr‚-Leroux G, Elis‚e E, Marynberg S, Fossey-Jouenne A, Zaparucha A, Grogan G and Vergne-Vaxelaire C | | | | Silent gene clusters encode magnetic organelle biosynthesis in a non-magnetotactic phototrophic bacterium | Dziuba MV, Paulus A, Schramm L, Awal RP, Posfai M, Monteil CL, Fouteau S, Uebe R and Schuler D | | | | Photobiocatalytic Oxyfunctionalization with High Reaction Rate using a Baeyer-Villiger Monooxygenase from Burkholderia xenovorans in Metabolically Engineered Cyanobacteria | Erdem E, Malihan-Yap L, Assil-Companioni L, Grimm H, Barone GD, Serveau-Avesque C, Amouric A, Duquesne K, de Berardinis V, Allahverdiyeva Y, Alphand V and Kourist R | | | | Complete Genome Sequence of Tepidibacter sp. Strain 8C15b, Isolated from Bank Sediments of Haiphong Bay, Vietnam | Fouteau S, Van VB, Rouy Z, Beraud M, Cruaud C, Cayol JL, Chifflet S, Van TC, The TP, Vallenet D, Oliveira PH, Mari X and Pradel N | | | | Restructuring of plankton genomic biogeography in the surface ocean under climate change | Fremont P, Gehlen M, Vrac M, Leconte J, Delmont TO, Wincker P, Iudicone D and Jaillon O | | | | Diversity and Evolution of Pigment Types in Marine Synechococcus Cyanobacteria | Grebert T, Garczarek L, Daubin V, Humily F, Marie D, Ratin M, Devailly A, Farrant GK, Mary I, Mella-Flores D, Tanguy G, Labadie K, Wincker P, Kehoe DM and Partensky F | | | | Genomic adaptation of the picoeukaryote Pelagomonas calceolata to iron-poor oceans revealed by a chromosome-scale genome sequence | Gu‚rin N, Ciccarella M, Flamant E, Fr‚mont P, Mangenot S, Istace B, Noel B, Belser C, Bertrand L, Labadie K, Cruaud C, Romac S, Bachy C, Gachenot M, Pelletier E, Alberti A, Jaillon O, Wincker P, Aury J-M and Carradec Q | | | | Viral origin of eukaryotic type IIA DNA topoisomerases | Guglielmini J, Gaia M, Da Cunha V, Criscuolo A, Krupovic M and Forterre P | | | | The automated Galaxy-SynBioCAD pipeline for synthetic biology design and engineering | Herisson J, Duigou T, du Lac M, Bazi-Kabbaj K, Sabeti Azad M, Buldum G, Telle O, El Moubayed Y, Carbonell P, Swainston N, Zulkower V, Kushwaha M, Baldwin GS and Faulon JL | | | | Genome-Wide TSS Distribution in Three Related Clostridia with Normalized Capp-Switch Sequencing | Hocq R, Jagtap S, Boutard M, Tolonen AC, Duval L, Pirayre A, Ferreira NL and Wasels F | | | | Pyruvate kinase, a metabolic sensor powering glycolysis, drives the metabolic control of DNA replication | Horemans S, Pitoulias M, Holland A, Pateau E, Lechaplais C, Ekaterina D, Perret A, Soultanas P and Janniere L | | | | Activating Silent Glycolysis Bypasses in <i>Escherichia coli</i> | Iacometti C, Marx K, H”nick M, Biletskaia V, Schulz-Mirbach H, Dronsella B, Satanowski A, Delmas VA, Berger A, Dubois I, Bouzon M, D”ring V, Noor E, Bar-Even A and Lindner SN | | | | Genes and enzymes involved in the biodegradation of the quaternary carbon compound pivalate in the denitrifying Thauera humireducens strain PIV-1 | Jacoby C, Ebenau-Jehle C, Saum K, Jehmlich N, von Bergen M, Bruls T and Boll M | | | | Synthesis of Chiral Amines via a Bi-Enzymatic Cascade Using an Ene-Reductase and Amine Dehydrogenase | Jongkind EPJ, Fossey-Jouenne A, Mayol O, Zaparucha A, Vergne-Vaxelaire C and Paul CE | | | | A robust approach to estimate relative phytoplankton cell abundances from metagenomes | Karlusich JJP, Pelletier E, Zinger L, Lombard F, Zingone A, Colin S, Gasol JM, Dorrell RG, Henry N, Scalco E, Acinas SG, Wincker P, de Vargas C and Bowler C | | | | Terrestrial and marine influence on atmospheric bacterial diversity over the north Atlantic and Pacific Oceans | Lang-Yona N, Flores JM, Haviv R, Alberti A, Poulain J, Belser C, Trainic M, Gat D, Ruscheweyh HJ, Wincker P, Sunagawa S, Rudich Y, Koren I and Vardi A | | | | Subtle limits to connectivity revealed by outlier loci within two divergent metapopulations of the deep-sea hydrothermal gastropod Ifremeria nautilei | Lu YAT, Ruault S, Daguin-Thiebaut C, Castel J, Bierne N, Broquet T, Wincker P, Perdereau A, Arnaud-Haond S, Gagnaire PA, Jollivet D, Hourdez S and Bonhomme F | | | | The Population Genomics of Increased Virulence and Antibiotic Resistance in Human Commensal Escherichia coli over 30 Years in France | Marin J, Clermont O, Royer G, Mercier-Darty M, Decousser JW, Tenaillon O, Denamur E and Blanquart F | | | | Interspecific introgression patterns reveal the origins of worldwide cultivated bananas in New Guinea | Martin G, Cottin A, Baurens FC, Labadie K, Hervouet C, Salmon F, Paulo-de-la-Reberdiere N, Van den Houwe I, Sardos J, Aury JM, D'Hont A and Yahiaoui N | | | | Genome-Wide Transcription Start Sites Mapping in Methylorubrum Grown with Dichloromethane and Methanol | Maucourt B, Roche D, Chaignaud P, Vuilleumier S and Bringel F | | | | Conserved and lineage-specific hypothetical proteins may have played a central role in the rise and diversification of major archaeal groups | Meheust R, Castelle CJ, Jaffe AL and Banfield JF | | | | A Chromosome-Level Genome Assembly of the European Beech (Fagus sylvatica) Reveals Anomalies for Organelle DNA Integration, Repeat Content and Distribution of SNPs | Mishra B, Ulaszewski B, Meger J, Aury J-M, Bodenes C, Lesur-Kupin I, Pfenninger M, Da Silva C, Gupta DK, Guichoux E, Heer K, Lalanne C, Labadie K, Opgenoorth L, Ploch S, Le Provost G, Salse J, Scotti I, Wotzel S, Plomion C, Burczyk J and Thines M | | | | Magnetosome proteins belong to universal protein families involved in many cell processes | Monteil CL, Vallenet D, Schuler D and Lefevre CT | | | | Whole-genome scanning reveals environmental selection mechanisms that shape diversity in populations of the epipelagic diatom Chaetoceros | Nef C, Madoui MA, Pelletier E and Bowler C | | | | A versatile active learning workflow for optimization of genetic and metabolic networks | Pandi A, Diehl C, Kharrazi AY, Scholz SA, Bobkova E, Faure L, Nattermann M, Adam D, Chapin N, Foroughijabbari Y, Moritz C, Paczia N, Cortina NS, Faulon JL and Erb TJ | | | | Biosynthetic potential of the global ocean microbiome | Paoli L, Ruscheweyh HJ, Forneris CC, Hubrich F, Kautsar S, Bhushan A, Lotti A, Clayssen Q, Salazar G, Milanese A, Carlstrom CI, Papadopoulou C, Gehrig D, Karasikov M, Mustafa H, Larralde M, Carroll LM, Sanchez P, Zayed AA, Cronin DR, Acinas SG, Bork P, Bowler C, Delmont TO, Gasol JM, Gossert AD, Kahles A, Sullivan MB, Wincker P, Zeller G, Robinson SL, Piel J and Sunagawa S | | | | Obligate sexual reproduction of a homothallic fungus closely related to the Cryptococcus pathogenic species complex | Passer AR, Clancey SA, Shea T, David-Palma M, Averette AF, Boekhout T, Porcel BM, Nowrousian M, Cuomo CA, Sun S, Heitman J and Coelho MA | | | | Characterization of a novel beta-alanine biosynthetic pathway consisting of promiscuous metabolic enzymes | Perchat N, Dubois C, Mor-Gautier R, Duquesne S, Lechaplais C, Roche D, Fouteau S, Darii E and Perret A | | | | In-depth characterization of denitrifier communities across different soil ecosystems in the tundra | Pessi IS, Viitamaki S, Virkkala AM, Eronen-Rasimus E, Delmont TO, Marushchak ME, Luoto M and Hultman J | | | | ORTHOSKIM: In silico sequence capture from genomic and transcriptomic libraries for phylogenomic and barcoding applications | Pouchon C, Boyer F, Roquet C, Denoeud F, Chave J, Coissac E, Alsos IG, Lavergne S, PhyloAlps C and PhyloNorway C | | | | Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems | Richter DJ, Watteaux R, Vannier T, Leconte J, Fremont P, Reygondeau G, Maillet N, Henry N, Benoit G, Da Silva O, Delmont TO, Fernandez-Guerra A, Suweis S, Narci R, Berney C, Eveillard D, Gavory F, Guidi L, Labadie K, Mahieu E, Poulain J, Romac S, Roux S, Dimier C, Kandels S, Picheral M, Searson S, Tara Oceans C, Pesant S, Aury JM, Brum JR, Lemaitre C, Pelletier E, Bork P, Sunagawa S, Lombard F, Karp-Boss L, Bowler C, Sullivan MB, Karsenti E, Mariadassou M, Probert I, Peterlongo P, Wincker P, de Vargas C, Ribera d'Alcala M, Iudicone D and Jaillon O | | | | Transcriptome of the synganglion in the tick Ixodes ricinus and evolution of the cys-loop ligand-gated ion channel family in ticks | Rispe C, Hervet C, de la Cotte N, Daveu R, Labadie K, Noel B, Aury JM, Thany S, Taillebois E, Cartereau A, Le Mauff A, Charvet CL, Auger C, Courtot E, Neveu C and Plantard O | | | | Transcriptome of the synganglion in the tick Ixodes ricinus and evolution of the cys-loop ligand-gated ion channel family in ticks | Rispe C, Hervet C, de la Cotte N, Daveu R, Labadie K, Noel B, Aury JM, Thany S, Taillebois E, Cartereau A, Le Mauff A, Charvet CL, Auger C, Courtot E, Neveu C and Plantard O | | | | Tuning of Gene Expression in Clostridium phytofermentans Using Synthetic Promoters and CRISPRi | Rostain W, Zaplana T, Boutard M, Baum C, Tabuteau S, Sanitha M, Ramya M, Guss A, Ettwiller L and Tolonen AC | | | | O-Antigen Targeted Vaccines Against Escherichia coli May Be Useful in Reducing Morbidity, Mortality, and Antimicrobial Resistance | Royer G, Clermont O, Condamine B, Mercier-Darty M, Laouean C, Lefort A, Denamur E, de Lastours V and Grp CS | | | | Reduced Chlorhexidine Susceptibility Is Associated with Tetracycline Resistance tet Genes in Clinical Isolates of Escherichia coli | Royer G, de La Rosa JMO, Vuillemin X, Lacombe B, Chau F, Clermont O, Mercier-Darty M, Decousser JW, Ricard JD, Nordmann P, Denamur E and Poirel L | | | | Genome-wide evolutionary response of European oaks during the Anthropocene | Saleh D, Chen J, Leple JC, Leroy T, Truffaut L, Dencausse B, Lalanne C, Labadie K, Lesur I, Bert D, Lagane F, Morneau F, Aury JM, Plomion C, Lascoux M and Kremer A | | | | Lifespan prolonging mechanisms and insulin upregulation without fat accumulation in long-lived reproductives of a higher termite | Seite S, Harrison MC, Sillam-Dusses D, Lupoli R, Van Dooren TJM, Robert A, Poissonnier LA, Lemainque A, Renault D, Acket S, Andrieu M, Viscarra J, Sul HS, De Beer ZW, Bornberg-Bauer E and Vasseur-Cognet M | | | | Tempo and drivers of plant diversification in the European mountain system | Smycka J, Roquet C, Boleda M, Alberti A, Boyer F, Douzet R, Perrier C, Rome M, Valay JG, Denoeud F, Semberova K, Zimmermann NE, Thuiller W, Wincker P, Alsos IG, Coissac E, Layergne S and PhyloAlps C | | | | Cell-Free Biosensors and AI Integration | Soudier P, Faure L, Kushwaha M and Faulon JL | | | | Toehold switch based biosensors for sensing the highly trafficked rosewood Dalbergia maritima | Soudier P, Pinzon DR, Reif-Trauttmansdorff T, Hijazi H, Cherriere M, Pereira CG, Blaise D, Pispisa M, Saint-Julien A, Hamlet W, Nguevo M, Gomes E, Belkhelfa S, Niarakis A, Kushwaha M and Grigoras I | | | | SulfAtlas, the sulfatase database: state of the art and new developments | Stam M, Lelievre P, Hoebeke M, Corre E, Barbeyron T and Michel G | | | | Evidence of Sexual Transmission of Extended-Spectrum beta-Lactamase-Producing Enterobacterales: A Cross-sectional and Prospective Study | Surgers L, Chiarabini T, Royer G, Rougier H, Mercier-Darty M, Decre D, Valin N, Woerther PL, Decousser JW, Girard PM, Lacombe K and Boyd A | | | | Genome-wide mapping of individual replication fork velocities using nanopore sequencing | Theulot B, Lacroix L, Arbona JM, Millot GA, Jean E, Cruaud C, Pellet J, Proux F, Hennion M, Engelen S, Lemainque A, Audit B, Hyrien O and Le Tallec B | | | | The genomic history and global expansion of domestic donkeys | Todd ET, Tonasso-Calviere L, Chauvey L, Schiavinato S, Fages A, Seguin-Orlando A, Clavel P, Khan N, Pardal LP, Rosa LP, Librado P, Ringbauer H, Verdugo M, Southon J, Aury JM, Perdereau A, Vila E, Marzullo M, Prato O, Tecchiati U, Gianni GB, Tagliacozzo A, Tine V, Alhaique F, Cardoso JL, Valente MJ, Antunes MT, Frantz L, Shapiro B, Bradley DG, Boulbes N, Gardeisen A, Horwitz LK, Oztan A, Arbuckle BS, Onar V, Clavel B, Lepetz S, Vahdati AA, Davoudi H, Mohaseb A, Mashkour M, Bouchez O, Donnadieu C, Wincker P, Brooks SA, Beja-Pereira A, Wu DD and Orlando L | | | | Unifying the known and unknown microbial coding sequence space | Vanni C, Schechter MS, Acinas SG, Barberan A, Buttigieg PL, Casamayor EO, Delmont TO, Duarte CM, Eren AM, Finn RD, Kottmann R, Mitchell A, Sanchez P, Siren K, Steinegger M, Gloeckner FO and Fernandez-Guerra A | | | | The Ocean Gene Atlas v2.0: online exploration of the biogeography and phylogeny of plankton genes | Vernette C, Lecubin J, Sanchez P, Sunagawa S, Delmont TO, Acinas SG, Pelletier E, Hingamp P, Lescot M and Tara Oceans C | | | | Reply to: When did mammoths go extinct? | Wang Y, Prohaska A, Dong H, Alberti A, Alsos IG, Beilman DW, Bjork AA, Cao J, Cherezova AA, Coissac E, De Sanctis B, Denoeud F, Dockter C, Durbin R, Edwards ME, Edwards NR, Esdale J, Fedorov GB, Fernandez-Guerra A, Froese DG, Gusarova G, Haile J, Holden PB, Kjeldsen KK, Kjaer KH, Korneliussen TS, Lammers Y, Larsen NK, Macleod R, Mangerud J, McColl H, Merkel MKF, Money D, Moller P, Nogues-Bravo D, Orlando L, Owens HL, Pedersen MW, Racimo F, Rahbek C, Rasic JT, Rouillard A, Ruter AH, Skadhauge B, Svendsen JI, Tikhonov A, Vinner L, Wincker P, Xing Y, Zhang Y, Meltzer DJ and Willerslev E | | |
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