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Genoscope Publications

Published on 25 June 2018
  
Community-led, integrated, reproducible multi-omics with anvi'o
Eren AM, Kiefl E, Shaiber A, Veseli I, Miller SE, Schechter MS, Fink I, Pan JN, Yousef M, Fogarty EC, Trigodet F, Watson AR, Esen OC, Moore RM, Clayssen Q, Lee MD, Kivenson V, Graham ED, Merrill BD, Karkman A, Blankenberg D, Eppley JM, Sjodin A, Scott JJ, Vazquez-Campos X, McKay LJ, McDaniel EA, Stevens SLR, Anderson RE, Fuessel J, Fernandez-Guerra A, Maignien L, Delmont TO and Willis AD
Rapid protein evolution, organellar reductions, and invasive intronic elements in the marine aerobic parasite dinoflagellate Amoebophrya spp
Farhat S, Le P, Kayal E, Noel B, Bigeard E, Corre E, Maumus F, Florent I, Alberti A, Aury JM, Barbeyron T, Cai RB, Da Silva C, Istace B, Labadie K, Marie D, Mercier J, Rukwavu T, Szymczak J, Tonon T, Alves-de-Souza C, Rouze P, van de Peer Y, Wincker P, Rombauts S, Porcel BM and Guillou L
Phylogenetic signatures of ecological divergence and leapfrog adaptive radiation in Espeletia
Pouchon C, Lavergne S, Fernandez A, Alberti A, Aubert S and Mavarez J
American Journal of Botany 108 (1), [Epub ahead of print], 2021
The Treasure Vault Can be Opened: Large-Scale Genome Skimming Works Well Using Herbarium and Silica Gel Dried Material
Alsos IG, Lavergne S, Merkel MKF, Boleda M, Lammers Y, Alberti A, Pouchon C, Denoeud F, Pitelkova I, Puscas M, Roquet C, Hurdu BI, Thuiller W, Zimmermann NE, Hollingsworth PM and Coissac E
Plastome comparative genomics in maples resolves the infrageneric backbone relationships
Areces-Berazain F, Wang YX, Hinsinger DD and Strijk JS
Genetic Analysis of Citrobacter sp.86 Reveals Involvement of Corrinoids in Chlordecone and Lindane Biotransformations
Barbance A, Della-Negra O, Chaussonnerie S, Delmas V, Muselet D, Ugarte E, Saaidi PL, Weissenbach J, Fischer C, Le Paslier D and Fonknechten N
Continued Adaptation of C-4 Photosynthesis After an Initial Burst of Changes in the Andropogoneae Grasses
Bianconi ME, Hackel J, Vorontsova MS, Alberti A, Arthan W, Burke SV, Duvall MR, Kellogg EA, Lavergne S, McKain MR, Meunier A, Osborne CP, Traiperm P, Christin PA and Besnard G
A comprehensive resource for retrieving, visualizing, and integrating functional genomics data
Blum M, Cholley PE, Malysheva V, Nicaise S, Moehlin J, Gronemeyer H and Mendoza-Parra MA
Large scale active-learning-guided exploration for in vitro protein production optimization
Borkowski O, Koch M, Zettor A, Pandi A, Batista AC, Soudier P and Faulon JL
TbD1 deletion as a driver of the evolutionary success of modern epidemic Mycobacterium tuberculosis lineages
Bottai D, Frigui W, Sayes F, Di Luca M, Spadoni D, Pawlik A, Zoppo M, Orgeur M, Khanna V, Hardy D, Mangenot S, Barbe V, Medigue C, Ma L, Bouchier C, Tavanti A, Larrouy-Maumus G and Brosch R
Genome Size Variation and Comparative Genomics Reveal Intraspecific Diversity in Brassica rapa
Boutte J, Maillet L, Chaussepied T, Letort S, Aury JM, Belser C, Boideau F, Brunet A, Coriton O, Deniot G, Falentin C, Huteau V, Lode-Taburel M, Morice J, Trotoux G, Chevre AM, Rousseau-Gueutin M and de Carvalho JF
An Assessment of Environmental Metabarcoding Protocols Aiming at Favoring Contemporary Biodiversity in Inventories of Deep-Sea Communities
Brandt MI, Trouche B, Henry N, Liautard-Haag C, Maignien L, de Vargas C, Wincker P, Poulain J, Zeppilli D and Arnaud-Haond S
Large scale patterns of marine diatom richness: Drivers and trends in a changing ocean
Busseni G, Caputi L, Piredda R, Fremont P, Mele BH, Campese L, Scalco E, de Vargas C, Bowler C, d'Ovidio F, Zingone A, d'Alcala MR and Iudicone D
Cryptic species in the parasitic Amoebophrya species complex revealed by a polyphasic approach
Cai RB, Kayal E, Alves-de-Souza C, Bigeard E, Corre E, Jeanthon C, Marie D, Porcel BM, Siano R, Szymczak J, Wolf M and Guillou L
Metagenomic Mining for Amine Dehydrogenase Discovery
Caparco AA, Pelletier E, Petit JL, Jouenne A, Bommarius BR, de Berardinis V, Zaparucha A, Champion JA, Bommarius AS and Vergne-Vaxelaire C
A framework for in situ molecular characterization of coral holobionts using nanopore sequencing
Carradec Q, Poulain J, Boissin E, Hume BCC, Voolstra CR, Ziegler M, Engelen S, Cruaud C, Planes S and Wincker P
Characterization of Mollivirus kamchatka, the First Modern Representative of the Proposed Molliviridae Family of Giant Viruses
Christo-Foroux E, Alempic JM, Lartigue A, Santini S, Labadie K, Legendre M, Abergel C and Claverie JM
Mortality in Escherichia coli bloodstream infections: antibiotic resistance still does not make it
de Lastours V, Laouenan C, Royer G, Carbonnelle E, Lepeule R, Esposito-Farese M, Clermont O, Duval X, Fantin B, Mentre F, Decousser JW, Denamur E, Lefort A and Grp S
Transformation of the recalcitrant pesticide chlordecone by Desulfovibrio sp.86 with a switch from ring-opening dechlorination to reductive sulfidation activity
Della-Negra O, Chaussonnerie S, Fonknechten N, Barbance A, Muselet D, Martin DE, Fouteau S, Fischer C, Saaidi PL and Le Paslier D
BIOCOM-PIPE: a new user-friendly metabarcoding pipeline for the characterization of microbial diversity from 16S, 18S and 23S rRNA gene amplicons
Djemiel C, Dequiedt S, Karimi B, Cottin A, Girier T, El Djoudi Y, Wincker P, Lelievre M, Mondy S, Prevost-Boure NC, Maron PA, Ranjard L and Terrat S
Evolutionary Mechanisms of Long-Term Genome Diversification Associated With Niche Partitioning in Marine Picocyanobacteria
Dore H, Farrant GK, Guyet U, Haguait J, Humily F, Ratin M, Pitt FD, Ostrowski M, Six C, Brillet-Gueguen L, Hoebeke M, Bisch A, Le Corguille G, Corre E, Labadie K, Aury JM, Wincker P, Choi DH, Noh JH, Eveillard D, Scanlan DJ, Partensky F and Garczarek L
NAD(P)H-Dependent Enzymes for Reductive Amination: Active Site Description and Carbonyl-Containing Compound Spectrum
Ducrot L, Bennett M, Grogan G and Vergne-Vaxelaire C
Biogeography of marine giant viruses reveals their interplay with eukaryotes and ecological functions
Endo H, Blanc-Mathieu R, Li YZ, Salazar G, Henry N, Labadie K, de Vargas C, Sullivan MB, Bowler C, Wincker P, Karp-Boss L, Sunagawa S and Ogata H
Enzymatic Formation of an Artificial Base Pair Using a Modified Purine Nucleoside Triphosphate
Flamme M, Rothlisberger P, Levi-Acobas F, Chawla M, Oliva R, Cavallo L, Gasser G, Marliere P, Herdewijn P and Hollenstein M
Acs Chemical Biology 15 (11), 2872-2884, 2020
Tara Pacific Expedition's Atmospheric Measurements of Marine Aerosols across the Atlantic and Pacific Oceans: Overview and Preliminary Results
Flores JM, Bourdin G, Altaratz O, Trainic M, Lang-Yona N, Dzimban E, Steinau S, Tettich F, Planes S, Allemand D, Agostini S, Banaigs B, Boissin E, Boss E, Douville E, Forcioli D, Furla P, Galand PE, Sullivan MB, Gilson E, Lombard F, Moulin C, Pesant S, Poulain J, Reynaud S, Romac S, Sunagawa S, Thomas OP, Trouble R, de Vargas C, Thurber RV, Voolstra CR, Wincker P, Zoccola D, Bowler C, Gorsky G, Rudich Y, Vardi A and Koren I
Persistence of environmental DNA in cultivated soils: implication of this memory effect for reconstructing the dynamics of land use and cover changes
Foucher A, Evrard O, Ficetola GF, Gielly L, Poulain J, Giguet-Covex C, Laceby JP, Salvador-Blanes S, Cerdan O and Poulenard J
Effect of arsenite and growth in biofilm conditions on the evolution of Thiomonas sp. CB2
Freel KC, Fouteau S, Roche D, Farasin J, Huber A, Koechler S, Peres M, Chiboub O, Varet H, Proux C, Deschamps J, Briandet R, Torchet R, Cruveiller S, Lievremont D, Coppee JY, Barbe V and Arsene-Ploetze F
Cyanorak v2.1: a scalable information system dedicated to the visualization and expert curation of marine and brackish picocyanobacteria genomes
Garczarek L, Guyet U, Dore H, Farrant GK, Hoebeke M, Brillet-Gueguen L, Bisch A, Ferrieux M, Siltanen J, Corre E, Le Corguille G, Ratin M, Pitt FD, Ostrowski M, Conan M, Siegel A, Labadie K, Aury J-M, Wincker P, Scanlan DJ and Partensky F
Nucleic acids research (), , 2020
PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph
Gautreau G, Bazin A, Gachet M, Planel R, Burlot L, Dubois M, Perrin A, Medigue C, Calteau A, Cruveiller S, Matias C, Ambroise C, Rocha EPC and Vallenet D
REPLY TO KU AND SUN: Ancestors of modern giant and large eukaryotic dsDNA viruses infected proto-eukaryotes
Guglielmini J, Woo AC, Krupovic M, Forterre P and Gaia M
FORK-seq: replication landscape of the Saccharomyces cerevisiae genome by nanopore sequencing
Hennion M, Arbona JM, Lacroix L, Cruaud C, Theulot B, Le Tallec B, Proux F, Wu X, Novikova E, Engelen S, Lemainque A, Audit B and Hyrien O
BiSCoT: improving large eukaryotic genome assemblies with optical maps
Istace B, Belser C and Aury JM
Channeling C1 Metabolism toward S-Adenosylmethionine-Dependent Conversion of Estrogens to Androgens in Estrogen-Degrading Bacteria
Jacoby C, Krull J, Andexer J, Jehmlich N, von Bergen M, Bruls T and Boll M
Alterocin, an Antibiofilm Protein Secreted by Pseudoalteromonas sp. Strain 3J6
Jouault A, Gobet A, Simon M, Portier E, Perennou M, Corre E, Gaillard F, Vallenet D, Michel G, Fleury Y, Bazire A and Dufour A
Biogeography of soil microbial habitats across France
Karimi B, Villerd J, Dequiedt S, Terrat S, Boure NCP, Djemiel C, Lelievre M, Tripied J, Nowak V, Saby NPA, Bispo A, Jolivet C, Arrouays D, Wincker P, Cruaud C and Ranjard L
Reinforcement Learning for Bioretrosynthesis
Koch M, Duigou T and Faulon JL
Binning unassembled short reads based on k-mer abundance covariance using sparse coding
Kyrgyzov O, Prost V, Gazut S, Farcy B and Bruls T
Investigating population-scale allelic differential expression in wild populations ofOithona similis(Cyclopoida, Claus, 1866)
Laso-Jadart R, Sugier K, Petit E, Labadie K, Peterlongo P, Ambroise C, Wincker P, Jamet JL and Madoui MA
Pyruvate Aldolases Catalyze Cross-Aldol Reactions between Ketones: Highly Selective Access to Multi-Functionalized Tertiary Alcohols
Laurent V, Gourbeyre L, Uzel A, Helaine V, Nauton L, Traikia M, de Berardinis V, Salanoubat M, Gefflaut T, Lemaire M and Guerard-Helaine C
Genome Resolved Biogeography of Mamiellales
Leconte J, Benites LF, Vannier T, Wincker P, Piganeau G and Jaillon O
Genomic architecture of endogenous ichnoviruses reveals distinct evolutionary pathways leading to virus domestication in parasitic wasps
Legeai F, Santos BF, Robin S, Bretaudeau A, Dikow RB, Lemaitre C, Jouan V, Ravallec M, Drezen JM, Tagu D, Baudat F, Gyapay G, Zhou X, Liu SL, Webb BA, Brady S and Volkoff AN
ATP Regeneration System in Chemoenzymatic Amide Bond Formation with Thermophilic CoA Ligase
Lelievre CM, Balandras M, Petit JL, Vergne-Vaxelaire C and Zaparucha A
Adaptive introgression as a driver of local adaptation to climate in European white oaks
Leroy T, Louvet JM, Lalanne C, Le Provost G, Labadie K, Aury JM, Delzon S, Plomion C and Kremer A
Massive postglacial gene flow between European white oaks uncovered genes underlying species barriers
Leroy T, Rougemont Q, Dupouey JL, Bodenes C, Lalanne C, Belser C, Labadie K, Le Provost G, Aury JM, Kremer A and Plomion C
Comparative assessment of long-read error correction software applied to Nanopore RNA-sequencing data
Lima L, Marchet C, Caboche S, Da Silva C, Istace B, Aury JM, Touzet H and Chikhi R
Serial horizontal transfer of vitamin-biosynthetic genes enables the establishment of new nutritional symbionts in aphids' di-symbiotic systems
Manzano-Marin A, d'acier AC, Clamens AL, Orvain C, Cruaud C, Barbe V and Jousselin E
Chromosome reciprocal translocations have accompanied subspecies evolution in bananas
Martin G, Baurens FC, Hervouet C, Salmon F, Delos JM, Labadie K, Perdereau A, Mournet P, Blois L, Dupouy M, Carreel F, Ricci S, Lemainque A, Yahiaoui N and D'Hont A
Comparative Whole-Genome Phylogeny of Animal, Environmental, and Human Strains Confirms the Genogroup Organization and Diversity of the Stenotrophomonas maltophilia Complex
Mercier-Darty M, Royer G, Lamy B, Charron C, Lemenand O, Gomart C, Fourreau F, Madec JY, Jumas-Bilak E, Decousser JW, Resapath N and Col BVHN
Repeated horizontal gene transfers triggered parallel evolution of magnetotaxis in two evolutionary divergent lineages of magnetotactic bacteria
Monteil CL, Grouzdev DS, Perriere G, Alonso B, Rouy Z, Cruveiller S, Ginet N, Pignol D and Lefevre CT
Colonization kinetics and implantation follow-up of the sewage microbiome in an urban wastewater treatment plant
Morin L, Goubet A, Madigou C, Pernelle JJ, Palmier K, Labadie K, Lemainque A, Michot O, Astoul L, Barbier P, Almayrac JL and Sghir A
Construction of a complete set of Neisseria meningitidis mutants and its use for the phenotypic profiling of this human pathogen
Muir A, Gurung I, Cehovin A, Bazin A, Vallenet D and Pelicic V
Use of beta(3)-methionine as an amino acid substrate of Escherichia coli methionyl-tRNA synthetase
Nigro G, Bourcier S, Lazennec-Schurdevin C, Schmitt E, Marliere P and Mechulam Y
Vitamin-guanosine monophosphate conjugates for in vitro transcription priming
Papastavrou N, Bande O, Marliere P, Groaz E and Herdewijn P
Analyses of the Root-Knot Nematode (Meloidogyne graminicola) Transcriptome during Host Infection Highlight Specific Gene Expression Profiling in Resistant Rice Plants
Petitot AS, Dereeper A, Da Silva C, Guy J and Fernandez D
In situ metabolic activities of uncultivated Ferrovum sp. CARN8 evidenced by metatranscriptomic analysis
Plewniak F, Koechler S, Le Paslier D, Hery M, Bruneel O and Bertin PN
Ancestral state reconstruction of metabolic pathways across pangenome ensembles
Psomopoulos FE, van Helden J, Medigue C, Chasapi A and Ouzounis CA
Modulated Response ofAspergillus fumigatusandStenotrophomonas maltophiliato Antimicrobial Agents in Polymicrobial Biofilm
Roisin L, Melloul E, Woerther PL, Royer G, Decousser JW, Guillot J, Dannaoui E and Botterel F
The Protector within: Comparative Genomics of APSE Phages across Aphids Reveals Rampant Recombination and Diverse Toxin Arsenals
Rouil J, Jousselin E, d'acier AC, Cruaud C and Manzano-Marin A
Long-read assembly of the Brassica napus reference genome Darmor-bzh
Rousseau-Gueutin M, Belser C, Da Silva C, Richard G, Istace B, Cruaud C, Falentin C, Boideau F, Boutte J, Delourme R, Deniot G, Engelen S, de Carvalho JF, Lemainque A, Maillet L, Morice J, Wincker P, Denoeud F, Chevre A-M and Aury J-M
Outbreak of an Uncommon Rifampin-resistant bla(NDM-1)Citrobacter amalonaticus Strain in a Digestive Rehabilitation Center: The Putative Role of Rifaximin
Royer G, Fourreau F, Gomart C, Maurand A, Hacquin B, Ducellier D, Cizeau F, Lo S, Cordonnier-Jourdin C, Mercier-Darty M and Decousser JW
Engineering Clostridium acetobutylicum to utilize cellulose by heterologous expression of a family 5 cellulase
Sanitha M, Fathima AA, Tolonen AC and Ramya M
Genome-enabled phylogenetic and functional reconstruction of an araphid pennate diatom Plagiostriata sp. CCMP470, previously assigned as a radial centric diatom, and its bacterial commensal
Sato S, Nanjappa D, Dorrell RG, Vieira FRJ, Kazamia E, Tirichine L, Veluchamy A, Heilig R, Aury JM, Jaillon O, Wincker P, Fussy Z, Obornik M, Munoz-Gomez SA, Mann DG, Bowler C and Zingone A
Functional and genetic markers of niche partitioning among enigmatic members of the human oral microbiome
Shaiber A, Willis AD, Delmont TO, Roux S, Chen LX, Schmid AC, Yousef M, Watson AR, Lolans K, Esen OC, Lee STM, Downey N, Morrison HG, Dewhirst FE, Welch JLM and Eren AM
CDYL2 Epigenetically Regulates MIR124 to Control NF-kappa B/STAT3-Dependent Breast Cancer Cell Plasticity
Siouda M, Dujardin AD, Barbollat-Boutrand L, Mendoza-Parra MA, Gibert B, Ouzounova M, Bouaoud J, Tonon L, Robert M, Foy JP, Lavergne V, Manie SN, Viari A, Puisieux A, Ichim G, Gronemeyer H, Saintigny P and Mulligan P
Into the bloom: Molecular response of pelagic tunicates to fluctuating food availability
Sordino P, D'Aniello S, Pelletier E, Wincker P, Nittoli V, Stemmann L, Mazzocchi MG, Lombard F, Iudicone D and Caputi L
Museomics for reconstructing historical floristic exchanges: Divergence of stone oaks across Wallacea
Strijk JS, Binh HT, Ngoc NV, Pereira JT, Slik JWF, Sukri RS, Suyama Y, Tagane S, Wieringa JJ, Yahara T and Hinsinger DD
Tara Oceans: towards global ocean ecosystems biology
Sunagawa S, Acinas SG, Bork P, Bowler C, Eveillard D, Gorsky G, Guidi L, Iudicone D, Karsenti E, Lombard F, Ogata H, Pesant S, Sullivan MB, Wincker P, de Vargas C and Tara Oceans C
Modulation of Quorum Sensing as an Adaptation to Nodule Cell Infection during Experimental Evolution of Legume Symbionts
Tang MX, Bouchez O, Cruveiller S, Masson-Boivin C and Capela D
Phylogenetic distribution and evolutionary dynamics of nod and T3SS genes in the genus Bradyrhizobium
Teulet A, Gully D, Rouy Z, Camuel A, Koebnik R, Giraud E and Lassalle F
MicroScope: an integrated platform for the annotation and exploration of microbial gene functions through genomic, pangenomic and metabolic comparative analysis
Vallenet D, Calteau A, Dubois M, Amours P, Bazin A, Beuvin M, Burlot L, Bussell X, Fouteau S, Gautreau G, Lajus A, Langlois J, Planel R, Roche D, Rollin J, Rouy Z, Sabatet V and Medigue C
Transcriptome reconstruction and functional analysis of eukaryotic marine plankton communities via high-throughput metagenomics and metatranscriptomics
Vorobev A, Dupouy M, Carradec Q, Delmont TO, Annamale A, Wincker P and Pelletier E
Virus-host coexistence in phytoplankton through the genomic lens
Yau S, Krasovec M, Benites LF, Rombauts S, Groussin M, Vancaester E, Aury JM, Derelle E, Desdevises Y, Escande ML, Grimsley N, Guy J, Moreau H, Sanchez-Brosseau S, van de Peer Y, Vandepoele K, Gourbiere S and Piganeau G
Effects of iron and light availability on phytoplankton photosynthetic properties in the Ross Sea
Alderkamp AC, van Dijken GL, Lowry KE, Lewis KM, Joy-Warren HL, van de Poll W, Laan P, Gerringa L, Delmont TO, Jenkins BD and Arrigo KR
The class II benzoyl-coenzyme A reductase complex from the sulfate-reducing Desulfosarcina cetonica
Anselmann SEL, Loffler C, Stark HJ, Jehmlich N, von Bergen M, Bruls T and Boll M
Discovering millions of plankton genomic markers from the Atlantic Ocean and the Mediterranean Sea
Arif M, Gauthier J, Sugier K, Iudicone D, Jaillon O, Wincker P, Peterlongo P and Madoui MA
Biosensor-based enzyme engineering approach applied to psicose biosynthesis
Armetta J, Berthome R, Cros A, Pophillat C, Colombo BM, Pandi A and Grigoras I
Recombination and Large Structural Variations Shape Interspecific Edible Bananas Genomes
Baurens FC, Martin G, Hervouet C, Salmon F, Yohome D, Ricci S, Rouard M, Habas R, Lemainque A, Yahiaoui N and D'Hont A
Characterization of L-Carnitine Metabolism in Sinorhizobium meliloti
Bazire P, Perchat N, Darii E, Lechaplais C, Salanoubat M and Perret A
Continuous Culture Adaptation of Methylobacterium extorquens AM1 and TK 0001 to Very High Methanol Concentrations
Belkhelfa S, Roche D, Dubois I, Berger A, Delmas VA, Cattolico L, Perret A, Labadie K, Perdereau AC, Darii E, Pateau E, de Berardinis V, Salanoubat M, Bouzon M and Doring V
Single cell ecogenomics reveals mating types of individual cells and ssDNA viral infections in the smallest photosynthetic eukaryotes
Benites LF, Poulton N, Labadie K, Sieracki ME, Grimsleyl N and Piganeau G
An evaluation of sequencing coverage and genotyping strategies to assess neutral and adaptive diversity
Benjelloun B, Boyer F, Streeter I, Zamani W, Engelen S, Alberti A, Alberto FJ, BenBati M, Ibnelbachyr M, Chentouf M, Bechchari A, Rezaei HR, Naderi S, Stella A, Chikhi A, Clarke L, Kijas J, Flicek P, Taberlet P and Pompanon F
The Arginine Deiminase Operon Is Responsible for a Fitness Trade-Off in Extended-Spectrum-beta-Lactamase-Producing Strains of Escherichia coli
Billard-Pomares T, Clermont O, Castellanos M, Magdoud F, Royer G, Condamine B, Fouteau S, Barbo V, Roche D, Cruveiller S, Medigue C, Pognard D, Glodt J, Dion S, Rigal O, Picard B, Denamur E and Branger C
Colistin resistance in Parisian inpatient faecal Escherichia coli as the result of two distinct evolutionary pathways
Bourrel AS, Poirel L, Royer G, Darty M, Vuillemin X, Kieffer N, Clermont O, Denamur E, Nordmann P, Decousser JW, Lafaurie M, Bercot B, Walewski V, Lescat M, Carbonnelle E, Ousser F, Idri N, Ricard JD, Landraud L, Le Dorze M, Jacquier H, Cambau E, Lepeule R, Gomart C and Grp IR
Specialization of small non-conjugative plasmids in Escherichia coli according to their family types
Branger C, Ledda A, Billard-Pomares T, Doublet B, Barbe V, Roche D, Medigue C, Arlet G and Denamur E
Meta-Omics Reveals Genetic Flexibility of Diatom Nitrogen Transporters in Response to Environmental Changes
Busseni G, Vieira FRJ, Amato A, Pelletier E, Karlusich JJP, Ferrante MI, Wincker P, Rogato A, Bowler C, Sanges R, Maiorano L, Chiurazzi M, d'Alcala MR, Caputi L and Iudicone D
Community-Level Responses to Iron Availability in Open Ocean Plankton Ecosystems
Caputi L, Carradec Q, Eveillard D, Kirilovsky A, Pelletier E, Karlusich JJP, Vieira FRJ, Villar E, Chaffron S, Malviya S, Scalco E, Acinas SG, Alberti A, Aury JM, Benoiston AS, Bertrand A, Biard T, Bittner L, Boccara M, Brum JR, Brunet C, Busseni G, Carratala A, Claustre H, Coelho LP, Colin S, D'Aniello S, Da Silva C, Del Core M, Dore H, Gasparini S, Kokoszka F, Jamet JL, Lejeusne C, Lepoivre C, Lescot M, Lima-Mendez G, Lombard F, Lukes J, Maillet N, Madoui MA, Martinez E, Mazzocchi MG, Neou MB, Paz-Yepes J, Poulain J, Ramondenc S, Romagnan JB, Roux S, Manta DS, Sanges R, Speich S, Sprovieri M, Sunagawa S, Taillandier V, Tanaka A, Tirichine L, Trottier C, Uitz J, Veluchamy A, Vesela J, Vincent F, Yau S, Kandels-Lewis S, Searson S, Dimier C, Picheral M, Bork P, Boss E, De Vargas C, Follows MJ, Grimsley N, Guidi L, Hingamp P, Karsenti E, Sordino P, Stemmann L, Sullivan MB, Tagliabue A, Zingone A, Garczarek L, d'Ortenzio F, Testor P, Not F, d'Alcala MR, Wincker P, Bowler C, Iudicone D, Gorsky G, Jaillon O, Karp-Boss L, Krzic U, Ogata H, Pesant S, Raes J, Reynaud EG, Sardet C, Sieracki M, Velayoudon D, Weissenbach J and Tara Oceans C
Assessing the viral content of uncultured picoeukaryotes in the global-ocean by single cell genomics
Castillo YM, Mangot JF, Benites LF, Logares R, Kuronishi M, Ogata H, Jaillon O, Massana R, Sebastian M and Vaque D
ABC Transporters Required for Hexose Uptake by Clostridium phytofermentans
Cerisy T, Iglesias A, Rostain W, Boutard M, Pelle C, Perret A, Salanoubat M, Fierobe HP and Tolonen AC
A Targetron-Recombinase System for Large-Scale Genome Engineering of Clostridia
Cerisy T, Rostain W, Chhun A, Boutard M, Salanoubat M and Tolonen AC
2-Deoxyribose-5-phosphate aldolase, a remarkably tolerant aldolase towards nucleophile substrates
Chambre D, Guerard-Helaine C, Darii E, Mariage A, Petit JL, Salanoubat M, de Berardinis V, Lemaire M and Helaine V
Natural Chlordecone Degradation Revealed by Numerous Transformation Products Characterized in Key French West Indies Environmental Compartments
Chevallier ML, Della-Negra O, Chaussonnerie S, Barbance A, Muselet D, Lagarde F, Darii E, Ugarte E, Lescop E, Fonknechten N, Weissenbach J, Woignier T, Gallard JF, Vuilleumier S, Imfeld G, Le Paslier D and Saaidi PL
Simplified in Vitro and in Vivo Bioaccess to Prenylated Compounds
Couillaud J, Rico J, Rubini A, Hamrouni T, Courvoisier-Dezord E, Petit JL, Mariage A, Darii E, Duquesne K, de Berardinis V and Iacazio G
Cytonuclear interactions remain stable during allopolyploid evolution despite repeated whole-genome duplications in Brassica
de Carvalho JF, Lucas J, Deniot G, Falentin C, Filangi O, Gilet M, Legeai F, Lode M, Morice J, Trotoux G, Aury JM, Barbe V, Keller J, Snowdon R, He ZS, Denoeud F, Wincker P, Bancroft I, Chevre AM and Rousseau-Gueutin M
The Synthetic Microbiology Caucus: a fresh channel for exploring new ideas, challenging conventional wisdom and fostering community projects
de Lorenzo V and Marliere P
XszenFHal, a novel tryptophan 5-halogenase from Xenorhabdus szentirmaii
Domergue J, Erdmann D, Fossey-Jouenne A, Petit JL, Debard A, de Berardinis V, Vergne-Vaxelaire C and Zaparucha A
RetroRules: a database of reaction rules for engineering biology
Duigou T, du Lac M, Carbonell P and Faulon JL
Two large reciprocal translocations characterized in the disease resistance-rich burmannica genetic group of Musa acuminata
Dupouy M, Baurens FC, Derouault P, Hervouet C, Cardi C, Cruaud C, Istace B, Labadie K, Guiougou C, Toubi L, Salmon F, Mournet P, Rouard M, Yahiaoui N, Lemainque A, Martin G and D'Hont A
Mixotrophic protists display contrasted biogeographies in the global ocean
Faure E, Not F, Benoiston AS, Labadie K, Bittner L and Ayata SD
Development of a Sequence-Based Reference Physical Map of Pea (Pisum sativum L.)
Gali KK, Tar'an B, Madoui MA, van der Vossen E, van Oeveren J, Labadie K, Berges H, Bendahmane A, Lachagari RVB, Burstin J and Warkentin T
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