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Publications du Genoscope

Publié le 25 juin 2018
Genome-wide supermatrix analyses of maples (Acer, Sapindaceae) reveal recurring inter-continental migration, mass extinction, and rapid lineage divergence
Areces-Berazain F, Hinsinger DD and Strijk JS
Stealth Fluorescence Labeling for Live Microscopy Imaging of mRNA Delivery
Baladi T, Nilsson JR, Gallud A, Celauro E, Gasse C, Levi-Acobas F, Sarac I, Hollenstein MR, Dahlen A, Esbjorner EK and Wilhelmsson LM
Evaluating sediment and water sampling methods for the estimation of deep-sea biodiversity using environmental DNA
Brandt MI, Pradillon F, Trouche B, Henry N, Liautard-Haag C, Cambon-Bonavita MA, Cueff-Gauchard V, Wincker P, Belser C, Poulain J, Arnaud-Haond S and Zeppilli D
Bioinformatic pipelines combining denoising and clustering tools allow for more comprehensive prokaryotic and eukaryotic metabarcoding
Brandt MI, Trouche B, Quintric L, Gunther B, Wincker P, Poulain J and Arnaud-Haond S
Relative Influence of Plastic Debris Size and Shape, Chemical Composition and Phytoplankton-Bacteria Interactions in Driving Seawater Plastisphere Abundance, Diversity and Activity
Cheng JG, Jacquin J, Conan P, Pujo-Pay M, Barbe V, George M, Fabre P, Bruzaud S, Ter Halle A, Meistertzheim AL and Ghiglione JF
The NANOTUMOR consortium - Towards the Tumor Cell Atlas
Colin F, Schauer K, Hamiche A, Martineau P, Borg JP, Bednar J, Bertolin G, Camoin L, Collette Y, Dimitrov S, Fournier I, Hyenne V, Mendoza-Parra MA, Morelli X, Ronde P, Sumara I, Tramier M, Schultz P and Goetz JG
Sequence-independent RNA sensing and DNA targeting by a split domain CRISPR-Cas12a gRNA switch
Collins SP, Rostain W, Liao C and Beisel CL
Sequence diversity and evolution of a group of iflaviruses associated with ticks
Daveu R, Hervet C, Sigrist L, Sassera D, Jex A, Labadie K, Aury JM, Plantard O and Rispe C
Microbiological versus Chemical Reductive Sulfidation: An Experimental and Theoretical Study
Della-Negra O, de Bonneville BL, Chaussonnerie S, Le Paslier D, Frison G and Saaidi PL
A community perspective on the concept of marine holobionts: current status, challenges, and future directions
Dittami SM, Arboleda E, Auguet JC, Bigalke A, Briand E, Cardenas P, Cardini U, Decelle J, Engelen AH, Eveillard D, Gachoni CMM, Griffiths SM, Harder T, Kayal E, Kazamia E, Lathier FH, Medina M, Marzinelli EM, Morganti TM, Pons LN, Prado S, Pintado J, Saha M, selosse MA, Skillings D, Stock W, Sunagawa S, Toulza E, Vorobev A, Leblanc C and Not F
Ion channel profiling of the Lymnaea stagnalis ganglia via transcriptome analysis
Dong N, Bandura J, Zhang ZL, Wang Y, Labadie K, Noel B, Davison A, Koene JM, Sun HS, Coutellec MA and Feng ZP
Phylogenomic fingerprinting of tempo and functions of horizontal gene transfer within ochrophytes
Dorrell RG, Villain A, Perez-Lamarque B, de Kerdrel GA, McCallum G, Watson AK, Ait-Mohamed O, Alberti A, Corre E, Frischkorn KR, Karlusich JJP, Pelletier E, Morlon H, Bowler C and Blanc G
NAD(P)H-Dependent Enzymes for Reductive Amination: Active Site Description and Carbonyl-Containing Compound Spectrum
Ducrot L, Bennett M, Grogan G and Vergne-Vaxelaire C
Community-led, integrated, reproducible multi-omics with anvi'o
Eren AM, Kiefl E, Shaiber A, Veseli I, Miller SE, Schechter MS, Fink I, Pan JN, Yousef M, Fogarty EC, Trigodet F, Watson AR, Esen OC, Moore RM, Clayssen Q, Lee MD, Kivenson V, Graham ED, Merrill BD, Karkman A, Blankenberg D, Eppley JM, Sjodin A, Scott JJ, Vazquez-Campos X, McKay LJ, McDaniel EA, Stevens SLR, Anderson RE, Fuessel J, Fernandez-Guerra A, Maignien L, Delmont TO and Willis AD
Rapid protein evolution, organellar reductions, and invasive intronic elements in the marine aerobic parasite dinoflagellate Amoebophrya spp
Farhat S, Le P, Kayal E, Noel B, Bigeard E, Corre E, Maumus F, Florent I, Alberti A, Aury JM, Barbeyron T, Cai RB, Da Silva C, Istace B, Labadie K, Marie D, Mercier J, Rukwavu T, Szymczak J, Tonon T, Alves-de-Souza C, Rouze P, van de Peer Y, Wincker P, Rombauts S, Porcel BM and Guillou L
Giant viruses and the origin of eukaryotic RNA polymerases
Forterre P and Gaia M
Cyanorak v2.1: a scalable information system dedicated to the visualization and expert curation of marine and brackish picocyanobacteria genomes
Garczarek L, Guyet U, Dore H, Farrant GK, Hoebeke M, Brillet-Gueguen L, Bisch A, Ferrieux M, Siltanen J, Corre E, Le Corguille G, Ratin M, Pitt FD, Ostrowski M, Conan M, Siegel A, Labadie K, Aury JM, Wincker P, Scanlan DJ and Partensky F
Chromosomal scale assembly of parasitic wasp genome reveals symbiotic virus colonization
Gauthier J, Boulain H, van Vugt J, Baudry L, Persyn E, Aury JM, Noel B, Bretaudeau A, Legeai F, Warris S, Chebbi MA, Dubreuil G, Duvic B, Kremer N, Gayral P, Musset K, Josse T, Bigot D, Bressac C, Moreau S, Periquet G, Harry M, Montagne N, Boulogne I, Sabeti-Azad M, Maibeche M, Chertemps T, Hilliou F, Siaussat D, Amselem J, Luyten I, Capdevielle-Dulac C, Labadie K, Merlin BL, Barbe V, de Boer JG, Marbouty M, Consoli FL, Dupas S, Hua-Van A, Le Goff G, Bezier A, Jacquin-Joly E, Whitfield JB, Vet LEM, Smid HM, Kaiser L, Koszul R, Huguet E, Herniou EA and Drezen JM
Large-scale transcriptomics to dissect 2 years of the life of a fungal phytopathogen interacting with its host plant
Gay EJ, Soyer JL, Lapalu N, Linglin J, Fudal I, Da Silva C, Wincker P, Aury JM, Cruaud C, Levrel A, Lemoine J, Delourme R, Rouxel T and Balesdent MH
Biocatalysed synthesis of chiral amines: continuous colorimetric assays for mining amine-transaminases
Gourbeyre L, Heuson E, Charmantray F, Helaine V, Debard A, Petit JL, de Berardinis V and Gefflaut T
VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses
Guo JR, Bolduc B, Zayed AA, Varsani A, Dominguez-Huerta G, Delmont TO, Pratama AA, Gazitua MC, Vik D, Sullivan MB and Roux S
Eukaryotic virus composition can predict the efficiency of carbon export in the global ocean
Kaneko H, Blanc-Mathieu R, Endo H, Chaffron S, Delmont TO, Gaia M, Henry N, Hernandez-Velazquez R, Nguyen CH, Mamitsuka H, Forterre P, Jaillon O, de Vargas C, Sullivan MB, Suttle CA, Guidi L and Ogata H
Comparative genomics reveals new functional insights in uncultured MAST species
Labarre A, Lopez-Escard D, Latorre F, Leonard G, Bucchini F, Obiol A, Cruaud C, Sieracki ME, Jaillon O, Wincker P, Vandepoele K, Logares R and Massana R
AI-based mobile application to fight antibiotic resistance
Pascucci M, Royer G, Adamek J, Al Asmar M, Aristizabal D, Blanche L, Bezzarga A, Boniface-Chang G, Brunner A, Curel C, Dulac-Arnold G, Fakhri RM, Malou N, Nordon C, Runge V, Samson F, Sebastian E, Soukieh D, Vert JP, Ambroise C and Madoui MA
Phylogenetic signatures of ecological divergence and leapfrog adaptive radiation in Espeletia
Pouchon C, Lavergne S, Fernandez A, Alberti A, Aubert S and Mavarez J
Genomic signatures of clonality in the deep water kelp Laminaria rodriguezii
Reynes L, Thibaut T, Mauger S, Blanfune A, Holon F, Cruaud C, Couloux A, Valero M and Aurelle D
A community resource for paired genomic and metabolomic data mining
Schorn MA, Verhoeven S, Ridder L, Huber F, Acharya DD, Aksenov AA, Aleti G, Moghaddam JA, Aron AT, Aziz S, Bauermeister A, Bauman KD, Baunach M, Beemelmanns C, Beman JM, Berlanga-Clavero MV, Blacutt AA, Bode HB, Boullie A, Brejnrod A, Bugni TS, Calteau A, Cao L, Carrion VJ, Castelo-Branco R, Chanana S, Chase AB, Chevrette MG, Costa-Lotufo LV, Crawford JM, Currie CR, Cuypers B, Dang T, de Rond T, Demko AM, Dittmann E, Du C, Drozd C, Dujardin JC, Dutton RJ, Edlund A, Fewer DP, Garg N, Gauglitz JM, Gentry EC, Gerwick L, Glukhov E, Gross H, Gugger M, Matus DGG, Helfrich EJN, Hempel BF, Hur JS, Iorio M, Jensen PR, Kang KB, Kaysser L, Kelleher NL, Kim CS, Kim KH, Koester I, Konig GM, Leao T, Lee SR, Lee YY, Li XJ, Little JC, Maloney KN, Mannle D, Martin HC, McAvoy AC, Metcalf WW, Mohimani H, Molina-Santiago C, Moore BS, Mullowney MW, Muskat M, Nothias LF, O'Neill EC, Parkinson EI, Petras D, Piel J, Pierce EC, Pires K, Reher R, Romero D, Roper MC, Rust M, Saad H, Saenz C, Sanchez LM, Sorensen SJ, Sosio M, Sussmuth RD, Sweeney D, Tahlan K, Thomson RJ, Tobias NJ, Trindade-Silva AE, van Wezel GP, Wang MX, Weldon KC, Zhang F, Ziemert N, Duncan KR, Crusemann M, Rogers S, Dorrestein PC, Medema MH and van der Hooft JJJ
Chromosome-level reference genome of the soursop (Annona muricata): A new resource for Magnoliid research and tropical pomology
Strijk JS, Hinsinger DD, Roeder MM, Chatrou LW, Couvreur TLP, Erkens RHJ, Sauquet H, Pirie MD, Thomas DC and Cao KF
Nondestructive enzymatic deamination enables single-molecule long-read amplicon sequencing for the determination of 5-methylcytosine and 5-hydroxymethylcytosine at single-base resolution
Sun ZY, Vaisvila R, Hussong LM, Yan B, Baum C, Saleh L, Samaranayake M, Guan SX, Dai N, Correa IR, Pradhan S, Davis TB, Evans TC and Ettwiller LM
The Treasure Vault Can be Opened: Large-Scale Genome Skimming Works Well Using Herbarium and Silica Gel Dried Material
Alsos IG, Lavergne S, Merkel MKF, Boleda M, Lammers Y, Alberti A, Pouchon C, Denoeud F, Pitelkova I, Puscas M, Roquet C, Hurdu BI, Thuiller W, Zimmermann NE, Hollingsworth PM and Coissac E
Plastome comparative genomics in maples resolves the infrageneric backbone relationships
Areces-Berazain F, Wang YX, Hinsinger DD and Strijk JS
Genetic Analysis of Citrobacter sp.86 Reveals Involvement of Corrinoids in Chlordecone and Lindane Biotransformations
Barbance A, Della-Negra O, Chaussonnerie S, Delmas V, Muselet D, Ugarte E, Saaidi PL, Weissenbach J, Fischer C, Le Paslier D and Fonknechten N
panRGP: a pangenome-based method to predict genomic islands and explore their diversity
Bazin A, Gautreau G, Medigue C, Vallenet D and Calteau A
Continued Adaptation of C-4 Photosynthesis After an Initial Burst of Changes in the Andropogoneae Grasses
Bianconi ME, Hackel J, Vorontsova MS, Alberti A, Arthan W, Burke SV, Duvall MR, Kellogg EA, Lavergne S, McKain MR, Meunier A, Osborne CP, Traiperm P, Christin PA and Besnard G
A comprehensive resource for retrieving, visualizing, and integrating functional genomics data
Blum M, Cholley PE, Malysheva V, Nicaise S, Moehlin J, Gronemeyer H and Mendoza-Parra MA
Large scale active-learning-guided exploration for in vitro protein production optimization
Borkowski O, Koch M, Zettor A, Pandi A, Batista AC, Soudier P and Faulon JL
TbD1 deletion as a driver of the evolutionary success of modern epidemic Mycobacterium tuberculosis lineages
Bottai D, Frigui W, Sayes F, Di Luca M, Spadoni D, Pawlik A, Zoppo M, Orgeur M, Khanna V, Hardy D, Mangenot S, Barbe V, Medigue C, Ma L, Bouchier C, Tavanti A, Larrouy-Maumus G and Brosch R
Genome Size Variation and Comparative Genomics Reveal Intraspecific Diversity in Brassica rapa
Boutte J, Maillet L, Chaussepied T, Letort S, Aury JM, Belser C, Boideau F, Brunet A, Coriton O, Deniot G, Falentin C, Huteau V, Lode-Taburel M, Morice J, Trotoux G, Chevre AM, Rousseau-Gueutin M and de Carvalho JF
An Assessment of Environmental Metabarcoding Protocols Aiming at Favoring Contemporary Biodiversity in Inventories of Deep-Sea Communities
Brandt MI, Trouche B, Henry N, Liautard-Haag C, Maignien L, de Vargas C, Wincker P, Poulain J, Zeppilli D and Arnaud-Haond S
Large scale patterns of marine diatom richness: Drivers and trends in a changing ocean
Busseni G, Caputi L, Piredda R, Fremont P, Mele BH, Campese L, Scalco E, de Vargas C, Bowler C, d'Ovidio F, Zingone A, d'Alcala MR and Iudicone D
Cryptic species in the parasitic Amoebophrya species complex revealed by a polyphasic approach
Cai RB, Kayal E, Alves-de-Souza C, Bigeard E, Corre E, Jeanthon C, Marie D, Porcel BM, Siano R, Szymczak J, Wolf M and Guillou L
Metagenomic Mining for Amine Dehydrogenase Discovery
Caparco AA, Pelletier E, Petit JL, Jouenne A, Bommarius BR, de Berardinis V, Zaparucha A, Champion JA, Bommarius AS and Vergne-Vaxelaire C
A framework for in situ molecular characterization of coral holobionts using nanopore sequencing
Carradec Q, Poulain J, Boissin E, Hume BCC, Voolstra CR, Ziegler M, Engelen S, Cruaud C, Planes S and Wincker P
Characterization of Mollivirus kamchatka, the First Modern Representative of the Proposed Molliviridae Family of Giant Viruses
Christo-Foroux E, Alempic JM, Lartigue A, Santini S, Labadie K, Legendre M, Abergel C and Claverie JM
Mortality in Escherichia coli bloodstream infections: antibiotic resistance still does not make it
de Lastours V, Laouenan C, Royer G, Carbonnelle E, Lepeule R, Esposito-Farese M, Clermont O, Duval X, Fantin B, Mentre F, Decousser JW, Denamur E, Lefort A and Grp S
Transformation of the recalcitrant pesticide chlordecone by Desulfovibrio sp.86 with a switch from ring-opening dechlorination to reductive sulfidation activity
Della-Negra O, Chaussonnerie S, Fonknechten N, Barbance A, Muselet D, Martin DE, Fouteau S, Fischer C, Saaidi PL and Le Paslier D
BIOCOM-PIPE: a new user-friendly metabarcoding pipeline for the characterization of microbial diversity from 16S, 18S and 23S rRNA gene amplicons
Djemiel C, Dequiedt S, Karimi B, Cottin A, Girier T, El Djoudi Y, Wincker P, Lelievre M, Mondy S, Prevost-Boure NC, Maron PA, Ranjard L and Terrat S
Evolutionary Mechanisms of Long-Term Genome Diversification Associated With Niche Partitioning in Marine Picocyanobacteria
Dore H, Farrant GK, Guyet U, Haguait J, Humily F, Ratin M, Pitt FD, Ostrowski M, Six C, Brillet-Gueguen L, Hoebeke M, Bisch A, Le Corguille G, Corre E, Labadie K, Aury JM, Wincker P, Choi DH, Noh JH, Eveillard D, Scanlan DJ, Partensky F and Garczarek L
Biogeography of marine giant viruses reveals their interplay with eukaryotes and ecological functions
Endo H, Blanc-Mathieu R, Li YZ, Salazar G, Henry N, Labadie K, de Vargas C, Sullivan MB, Bowler C, Wincker P, Karp-Boss L, Sunagawa S and Ogata H
Enzymatic Formation of an Artificial Base Pair Using a Modified Purine Nucleoside Triphosphate
Flamme M, Rothlisberger P, Levi-Acobas F, Chawla M, Oliva R, Cavallo L, Gasser G, Marliere P, Herdewijn P and Hollenstein M
Tara Pacific Expedition's Atmospheric Measurements of Marine Aerosols across the Atlantic and Pacific Oceans: Overview and Preliminary Results
Flores JM, Bourdin G, Altaratz O, Trainic M, Lang-Yona N, Dzimban E, Steinau S, Tettich F, Planes S, Allemand D, Agostini S, Banaigs B, Boissin E, Boss E, Douville E, Forcioli D, Furla P, Galand PE, Sullivan MB, Gilson E, Lombard F, Moulin C, Pesant S, Poulain J, Reynaud S, Romac S, Sunagawa S, Thomas OP, Trouble R, de Vargas C, Thurber RV, Voolstra CR, Wincker P, Zoccola D, Bowler C, Gorsky G, Rudich Y, Vardi A and Koren I
Persistence of environmental DNA in cultivated soils: implication of this memory effect for reconstructing the dynamics of land use and cover changes
Foucher A, Evrard O, Ficetola GF, Gielly L, Poulain J, Giguet-Covex C, Laceby JP, Salvador-Blanes S, Cerdan O and Poulenard J
Effect of arsenite and growth in biofilm conditions on the evolution of Thiomonas sp. CB2
Freel KC, Fouteau S, Roche D, Farasin J, Huber A, Koechler S, Peres M, Chiboub O, Varet H, Proux C, Deschamps J, Briandet R, Torchet R, Cruveiller S, Lievremont D, Coppee JY, Barbe V and Arsene-Ploetze F
PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph
Gautreau G, Bazin A, Gachet M, Planel R, Burlot L, Dubois M, Perrin A, Medigue C, Calteau A, Cruveiller S, Matias C, Ambroise C, Rocha EPC and Vallenet D
REPLY TO KU AND SUN: Ancestors of modern giant and large eukaryotic dsDNA viruses infected proto-eukaryotes
Guglielmini J, Woo AC, Krupovic M, Forterre P and Gaia M
FORK-seq: replication landscape of the Saccharomyces cerevisiae genome by nanopore sequencing
Hennion M, Arbona JM, Lacroix L, Cruaud C, Theulot B, Le Tallec B, Proux F, Wu X, Novikova E, Engelen S, Lemainque A, Audit B and Hyrien O
BiSCoT: improving large eukaryotic genome assemblies with optical maps
Istace B, Belser C and Aury JM
Channeling C1 Metabolism toward S-Adenosylmethionine-Dependent Conversion of Estrogens to Androgens in Estrogen-Degrading Bacteria
Jacoby C, Krull J, Andexer J, Jehmlich N, von Bergen M, Bruls T and Boll M
Alterocin, an Antibiofilm Protein Secreted by Pseudoalteromonas sp. Strain 3J6
Jouault A, Gobet A, Simon M, Portier E, Perennou M, Corre E, Gaillard F, Vallenet D, Michel G, Fleury Y, Bazire A and Dufour A
Biogeography of soil microbial habitats across France
Karimi B, Villerd J, Dequiedt S, Terrat S, Boure NCP, Djemiel C, Lelievre M, Tripied J, Nowak V, Saby NPA, Bispo A, Jolivet C, Arrouays D, Wincker P, Cruaud C and Ranjard L
Dinoflagellate Host Chloroplasts and Mitochondria Remain Functional During Amoebophrya Infection
Kayal E, Alves-de-Souza C, Farhat S, Velo-Suarez L, Monjol J, Szymczak J, Bigeard E, Marie D, Noel B, Porcel BM, Corre E, Six C and Guillou L
Reinforcement Learning for Bioretrosynthesis
Koch M, Duigou T and Faulon JL
Binning unassembled short reads based on k-mer abundance covariance using sparse coding
Kyrgyzov O, Prost V, Gazut S, Farcy B and Bruls T
metaVaR: Introducing metavariant species models for reference-free metagenomic-based population genomics
Laso-Jadart R, Ambroise C, Peterlongo P and Madoui MA
Investigating population-scale allelic differential expression in wild populations ofOithona similis(Cyclopoida, Claus, 1866)
Laso-Jadart R, Sugier K, Petit E, Labadie K, Peterlongo P, Ambroise C, Wincker P, Jamet JL and Madoui MA
Pyruvate Aldolases Catalyze Cross-Aldol Reactions between Ketones: Highly Selective Access to Multi-Functionalized Tertiary Alcohols
Laurent V, Gourbeyre L, Uzel A, Helaine V, Nauton L, Traikia M, de Berardinis V, Salanoubat M, Gefflaut T, Lemaire M and Guerard-Helaine C
Genome Resolved Biogeography of Mamiellales
Leconte J, Benites LF, Vannier T, Wincker P, Piganeau G and Jaillon O
Genomic architecture of endogenous ichnoviruses reveals distinct evolutionary pathways leading to virus domestication in parasitic wasps
Legeai F, Santos BF, Robin S, Bretaudeau A, Dikow RB, Lemaitre C, Jouan V, Ravallec M, Drezen JM, Tagu D, Baudat F, Gyapay G, Zhou X, Liu SL, Webb BA, Brady S and Volkoff AN
ATP Regeneration System in Chemoenzymatic Amide Bond Formation with Thermophilic CoA Ligase
Lelievre CM, Balandras M, Petit JL, Vergne-Vaxelaire C and Zaparucha A
Adaptive introgression as a driver of local adaptation to climate in European white oaks
Leroy T, Louvet JM, Lalanne C, Le Provost G, Labadie K, Aury JM, Delzon S, Plomion C and Kremer A
Massive postglacial gene flow between European white oaks uncovered genes underlying species barriers
Leroy T, Rougemont Q, Dupouey JL, Bodenes C, Lalanne C, Belser C, Labadie K, Le Provost G, Aury JM, Kremer A and Plomion C
Comparative assessment of long-read error correction software applied to Nanopore RNA-sequencing data
Lima L, Marchet C, Caboche S, Da Silva C, Istace B, Aury JM, Touzet H and Chikhi R
Serial horizontal transfer of vitamin-biosynthetic genes enables the establishment of new nutritional symbionts in aphids' di-symbiotic systems
Manzano-Marin A, d'acier AC, Clamens AL, Orvain C, Cruaud C, Barbe V and Jousselin E
Chromosome reciprocal translocations have accompanied subspecies evolution in bananas
Martin G, Baurens FC, Hervouet C, Salmon F, Delos JM, Labadie K, Perdereau A, Mournet P, Blois L, Dupouy M, Carreel F, Ricci S, Lemainque A, Yahiaoui N and D'Hont A
Comparative Whole-Genome Phylogeny of Animal, Environmental, and Human Strains Confirms the Genogroup Organization and Diversity of the Stenotrophomonas maltophilia Complex
Mercier-Darty M, Royer G, Lamy B, Charron C, Lemenand O, Gomart C, Fourreau F, Madec JY, Jumas-Bilak E, Decousser JW, Resapath N and Col BVHN
Repeated horizontal gene transfers triggered parallel evolution of magnetotaxis in two evolutionary divergent lineages of magnetotactic bacteria
Monteil CL, Grouzdev DS, Perriere G, Alonso B, Rouy Z, Cruveiller S, Ginet N, Pignol D and Lefevre CT
Colonization kinetics and implantation follow-up of the sewage microbiome in an urban wastewater treatment plant
Morin L, Goubet A, Madigou C, Pernelle JJ, Palmier K, Labadie K, Lemainque A, Michot O, Astoul L, Barbier P, Almayrac JL and Sghir A
Construction of a complete set of Neisseria meningitidis mutants and its use for the phenotypic profiling of this human pathogen
Muir A, Gurung I, Cehovin A, Bazin A, Vallenet D and Pelicic V
Use of beta(3)-methionine as an amino acid substrate of Escherichia coli methionyl-tRNA synthetase
Nigro G, Bourcier S, Lazennec-Schurdevin C, Schmitt E, Marliere P and Mechulam Y
Vitamin-guanosine monophosphate conjugates for in vitro transcription priming
Papastavrou N, Bande O, Marliere P, Groaz E and Herdewijn P
Analyses of the Root-Knot Nematode (Meloidogyne graminicola) Transcriptome during Host Infection Highlight Specific Gene Expression Profiling in Resistant Rice Plants
Petitot AS, Dereeper A, Da Silva C, Guy J and Fernandez D
In situ metabolic activities of uncultivated Ferrovum sp. CARN8 evidenced by metatranscriptomic analysis
Plewniak F, Koechler S, Le Paslier D, Hery M, Bruneel O and Bertin PN
Ancestral state reconstruction of metabolic pathways across pangenome ensembles
Psomopoulos FE, van Helden J, Medigue C, Chasapi A and Ouzounis CA
Modulated Response ofAspergillus fumigatusandStenotrophomonas maltophiliato Antimicrobial Agents in Polymicrobial Biofilm
Roisin L, Melloul E, Woerther PL, Royer G, Decousser JW, Guillot J, Dannaoui E and Botterel F
The Protector within: Comparative Genomics of APSE Phages across Aphids Reveals Rampant Recombination and Diverse Toxin Arsenals
Rouil J, Jousselin E, d'acier AC, Cruaud C and Manzano-Marin A
Long-read assembly of the Brassica napus reference genome Darmor-bzh
Rousseau-Gueutin M, Belser C, Da Silva C, Richard G, Istace B, Cruaud C, Falentin C, Boideau F, Boutte J, Delourme R, Deniot G, Engelen S, de Carvalho JF, Lemainque A, Maillet L, Morice J, Wincker P, Denoeud F, Chevre AM and Aury JM
Outbreak of an Uncommon Rifampin-resistant bla(NDM-1)Citrobacter amalonaticus Strain in a Digestive Rehabilitation Center: The Putative Role of Rifaximin
Royer G, Fourreau F, Gomart C, Maurand A, Hacquin B, Ducellier D, Cizeau F, Lo S, Cordonnier-Jourdin C, Mercier-Darty M and Decousser JW
Engineering Clostridium acetobutylicum to utilize cellulose by heterologous expression of a family 5 cellulase
Sanitha M, Fathima AA, Tolonen AC and Ramya M
Genome-enabled phylogenetic and functional reconstruction of an araphid pennate diatom Plagiostriata sp. CCMP470, previously assigned as a radial centric diatom, and its bacterial commensal
Sato S, Nanjappa D, Dorrell RG, Vieira FRJ, Kazamia E, Tirichine L, Veluchamy A, Heilig R, Aury JM, Jaillon O, Wincker P, Fussy Z, Obornik M, Munoz-Gomez SA, Mann DG, Bowler C and Zingone A
Functional and genetic markers of niche partitioning among enigmatic members of the human oral microbiome
Shaiber A, Willis AD, Delmont TO, Roux S, Chen LX, Schmid AC, Yousef M, Watson AR, Lolans K, Esen OC, Lee STM, Downey N, Morrison HG, Dewhirst FE, Welch JLM and Eren AM
CDYL2 Epigenetically Regulates MIR124 to Control NF-kappa B/STAT3-Dependent Breast Cancer Cell Plasticity
Siouda M, Dujardin AD, Barbollat-Boutrand L, Mendoza-Parra MA, Gibert B, Ouzounova M, Bouaoud J, Tonon L, Robert M, Foy JP, Lavergne V, Manie SN, Viari A, Puisieux A, Ichim G, Gronemeyer H, Saintigny P and Mulligan P
Into the bloom: Molecular response of pelagic tunicates to fluctuating food availability
Sordino P, D'Aniello S, Pelletier E, Wincker P, Nittoli V, Stemmann L, Mazzocchi MG, Lombard F, Iudicone D and Caputi L
Museomics for reconstructing historical floristic exchanges: Divergence of stone oaks across Wallacea
Strijk JS, Binh HT, Ngoc NV, Pereira JT, Slik JWF, Sukri RS, Suyama Y, Tagane S, Wieringa JJ, Yahara T and Hinsinger DD
Tara Oceans: towards global ocean ecosystems biology
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Modulation of Quorum Sensing as an Adaptation to Nodule Cell Infection during Experimental Evolution of Legume Symbionts
Tang MX, Bouchez O, Cruveiller S, Masson-Boivin C and Capela D
Phylogenetic distribution and evolutionary dynamics of nod and T3SS genes in the genus Bradyrhizobium
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