| The Treasure Vault Can be Opened: Large-Scale Genome Skimming Works Well Using Herbarium and Silica Gel Dried Material | Alsos IG, Lavergne S, Merkel MKF, Boleda M, Lammers Y, Alberti A, Pouchon C, Denoeud F, Pitelkova I, Puscas M, Roquet C, Hurdu BI, Thuiller W, Zimmermann NE, Hollingsworth PM and Coissac E | |  | | Plastome comparative genomics in maples resolves the infrageneric backbone relationships | Areces-Berazain F, Wang YX, Hinsinger DD and Strijk JS | | | | Continued Adaptation of C-4 Photosynthesis After an Initial Burst of Changes in the Andropogoneae Grasses | Bianconi ME, Hackel J, Vorontsova MS, Alberti A, Arthan W, Burke SV, Duvall MR, Kellogg EA, Lavergne S, McKain MR, Meunier A, Osborne CP, Traiperm P, Christin PA and Besnard G | | | | TbD1 deletion as a driver of the evolutionary success of modern epidemic Mycobacterium tuberculosis lineages | Bottai D, Frigui W, Sayes F, Di Luca M, Spadoni D, Pawlik A, Zoppo M, Orgeur M, Khanna V, Hardy D, Mangenot S, Barbe V, Medigue C, Ma L, Bouchier C, Tavanti A, Larrouy-Maumus G and Brosch R | | | | An Assessment of Environmental Metabarcoding Protocols Aiming at Favoring Contemporary Biodiversity in Inventories of Deep-Sea Communities | Brandt MI, Trouche B, Henry N, Liautard-Haag C, Maignien L, de Vargas C, Wincker P, Poulain J, Zeppilli D and Arnaud-Haond S | | | | Large scale patterns of marine diatom richness: Drivers and trends in a changing ocean | Busseni G, Caputi L, Piredda R, Fremont P, Mele BH, Campese L, Scalco E, de Vargas C, Bowler C, d'Ovidio F, Zingone A, d'Alcala MR and Iudicone D | | | | Metagenomic Mining for Amine Dehydrogenase Discovery | Caparco AA, Pelletier E, Petit JL, Jouenne A, Bommarius BR, de Berardinis V, Zaparucha A, Champion JA, Bommarius AS and Vergne-Vaxelaire C | | | | Characterization of Mollivirus kamchatka, the First Modern Representative of the Proposed Molliviridae Family of Giant Viruses | Christo-Foroux E, Alempic JM, Lartigue A, Santini S, Labadie K, Legendre M, Abergel C and Claverie JM | | | | Mortality in Escherichia coli bloodstream infections: antibiotic resistance still does not make it | de Lastours V, Laouenan C, Royer G, Carbonnelle E, Lepeule R, Esposito-Farese M, Clermont O, Duval X, Fantin B, Mentre F, Decousser JW, Denamur E and Lefort A | | | | Transformation of the recalcitrant pesticide chlordecone by Desulfovibrio sp.86 with a switch from ring-opening dechlorination to reductive sulfidation activity | Della-Negra O, Chaussonnerie S, Fonknechten N, Barbance A, Muselet D, Martin DE, Fouteau S, Fischer C, Saaidi PL and Le Paslier D | | | | Biogeography of marine giant viruses reveals their interplay with eukaryotes and ecological functions | Endo H, Blanc-Mathieu R, Li YZ, Salazar G, Henry N, Labadie K, de Vargas C, Sullivan MB, Bowler C, Wincker P, Karp-Boss L, Sunagawa S and Ogata H | | | | Tara Pacific Expedition's Atmospheric Measurements of Marine Aerosols across the Atlantic and Pacific Oceans: Overview and Preliminary Results | Flores JM, Bourdin G, Altaratz O, Trainic M, Lang-Yona N, Dzimban E, Steinau S, Tettich F, Planes S, Allemand D, Agostini S, Banaigs B, Boissin E, Boss E, Douville E, Forcioli D, Furla P, Galand PE, Sullivan MB, Gilson E, Lombard F, Moulin C, Pesant S, Poulain J, Reynaud S, Romac S, Sunagawa S, Thomas OP, Trouble R, de Vargas C, Thurber RV, Voolstra CR, Wincker P, Zoccola D, Bowler C, Gorsky G, Rudich Y, Vardi A and Koren I | | | | Persistence of environmental DNA in cultivated soils: implication of this memory effect for reconstructing the dynamics of land use and cover changes | Foucher A, Evrard O, Ficetola GF, Gielly L, Poulain J, Giguet-Covex C, Laceby JP, Salvador-Blanes S, Cerdan O and Poulenard J | | | | PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph | Gautreau G, Bazin A, Gachet M, Planel R, Burlot L, Dubois M, Perrin A, Medigue C, Calteau A, Cruveiller S, Matias C, Ambroise C, Rocha EPC and Vallenet D | | | | FORK-seq: replication landscape of the Saccharomyces cerevisiae genome by nanopore sequencing | Hennion M, Arbona JM, Lacroix L, Cruaud C, Theulot B, Le Tallec B, Proux F, Wu X, Novikova E, Engelen S, Lemainque A, Audit B and Hyrien O | | | | Biogeography of soil microbial habitats across France | Karimi B, Villerd J, Dequiedt S, Terrat S, Boure NCP, Djemiel C, Lelievre M, Tripied J, Nowak V, Saby NPA, Bispo A, Jolivet C, Arrouays D, Wincker P, Cruaud C and Ranjard L | | | | Binning unassembled short reads based on k-mer abundance covariance using sparse coding | Kyrgyzov O, Prost V, Gazut S, Farcy B and Bruls T | | | | Investigating population-scale allelic differential expression in wild populations ofOithona similis(Cyclopoida, Claus, 1866) | Laso-Jadart R, Sugier K, Petit E, Labadie K, Peterlongo P, Ambroise C, Wincker P, Jamet JL and Madoui MA | | | | Pyruvate Aldolases Catalyze Cross-Aldol Reactions between Ketones: Highly Selective Access to Multi-Functionalized Tertiary Alcohols | Laurent V, Gourbeyre L, Uzel A, Helaine V, Nauton L, Traikia M, de Berardinis V, Salanoubat M, Gefflaut T, Lemaire M and Guerard-Helaine C | | | | Genome Resolved Biogeography of Mamiellales | Leconte J, Benites LF, Vannier T, Wincker P, Piganeau G and Jaillon O | | | | Genomic architecture of endogenous ichnoviruses reveals distinct evolutionary pathways leading to virus domestication in parasitic wasps | Legeai F, Santos BF, Robin S, Bretaudeau A, Dikow RB, Lemaitre C, Jouan V, Ravallec M, Drezen JM, Tagu D, Baudat F, Gyapay G, Zhou X, Liu SL, Webb BA, Brady S and Volkoff AN | | | | ATP Regeneration System in Chemoenzymatic Amide Bond Formation with Thermophilic CoA Ligase | Lelievre CM, Balandras M, Petit JL, Vergne-Vaxelaire C and Zaparucha A | | | | Adaptive introgression as a driver of local adaptation to climate in European white oaks | Leroy T, Louvet JM, Lalanne C, Le Provost G, Labadie K, Aury JM, Delzon S, Plomion C and Kremer A | | | | Massive postglacial gene flow between European white oaks uncovered genes underlying species barriers | Leroy T, Rougemont Q, Dupouey JL, Bodenes C, Lalanne C, Belser C, Labadie K, Le Provost G, Aury JM, Kremer A and Plomion C | | | | Serial horizontal transfer of vitamin-biosynthetic genes enables the establishment of new nutritional symbionts in aphids' di-symbiotic systems | Manzano-Marin A, d'acier AC, Clamens AL, Orvain C, Cruaud C, Barbe V and Jousselin E | | | | Comparative Whole-Genome Phylogeny of Animal, Environmental, and Human Strains Confirms the Genogroup Organization and Diversity of the Stenotrophomonas maltophilia Complex | Mercier-Darty M, Royer G, Lamy B, Charron C, Lemenand O, Gomart C, Fourreau F, Madec JY, Jumas-Bilak E, Decousser JW, Resapath N and Col BVHN | | | | Repeated horizontal gene transfers triggered parallel evolution of magnetotaxis in two evolutionary divergent lineages of magnetotactic bacteria | Monteil CL, Grouzdev DS, Perriere G, Alonso B, Rouy Z, Cruveiller S, Ginet N, Pignol D and Lefevre CT | | | | Colonization kinetics and implantation follow-up of the sewage microbiome in an urban wastewater treatment plant | Morin L, Goubet A, Madigou C, Pernelle JJ, Palmier K, Labadie K, Lemainque A, Michot O, Astoul L, Barbier P, Almayrac JL and Sghir A | | | | Use of beta(3)-methionine as an amino acid substrate of Escherichia coli methionyl-tRNA synthetase | Nigro G, Bourcier S, Lazennec-Schurdevin C, Schmitt E, Marliere P and Mechulam Y | | | | Vitamin-guanosine monophosphate conjugates for in vitro transcription priming | Papastavrou N, Bande O, Marliere P, Groaz E and Herdewijn P | | | | Analyses of the Root-Knot Nematode (Meloidogyne graminicola) Transcriptome during Host Infection Highlight Specific Gene Expression Profiling in Resistant Rice Plants | Petitot AS, Dereeper A, Da Silva C, Guy J and Fernandez D | | | | In situ metabolic activities of uncultivated Ferrovum sp. CARN8 evidenced by metatranscriptomic analysis | Plewniak F, Koechler S, Le Paslier D, Hery M, Bruneel O and Bertin PN | | | | The Protector within: Comparative Genomics of APSE Phages across Aphids Reveals Rampant Recombination and Diverse Toxin Arsenals | Rouil J, Jousselin E, d'acier AC, Cruaud C and Manzano-Marin A | | | | Engineering Clostridium acetobutylicum to utilize cellulose by heterologous expression of a family 5 cellulase | Sanitha M, Fathima AA, Tolonen AC and Ramya M | | | | Genome-enabled phylogenetic and functional reconstruction of an araphid pennate diatom Plagiostriata sp. CCMP470, previously assigned as a radial centric diatom, and its bacterial commensal | Sato S, Nanjappa D, Dorrell RG, Vieira FRJ, Kazamia E, Tirichine L, Veluchamy A, Heilig R, Aury JM, Jaillon O, Wincker P, Fussy Z, Obornik M, Munoz-Gomez SA, Mann DG, Bowler C and Zingone A | | | | Into the bloom: Molecular response of pelagic tunicates to fluctuating food availability | Sordino P, D'Aniello S, Pelletier E, Wincker P, Nittoli V, Stemmann L, Mazzocchi MG, Lombard F, Iudicone D and Caputi L | | | | Tara Oceans: towards global ocean ecosystems biology | Sunagawa S, Acinas SG, Bork P, Bowler C, Eveillard D, Gorsky G, Guidi L, Iudicone D, Karsenti E, Lombard F, Ogata H, Pesant S, Sullivan MB, Wincker P, de Vargas C and Tara Oceans C | | | | Modulation of Quorum Sensing as an Adaptation to Nodule Cell Infection during Experimental Evolution of Legume Symbionts | Tang MX, Bouchez O, Cruveiller S, Masson-Boivin C and Capela D | | | | MicroScope: an integrated platform for the annotation and exploration of microbial gene functions through genomic, pangenomic and metabolic comparative analysis | Vallenet D, Calteau A, Dubois M, Amours P, Bazin A, Beuvin M, Burlot L, Bussell X, Fouteau S, Gautreau G, Lajus A, Langlois J, Planel R, Roche D, Rollin J, Rouy Z, Sabatet V and Medigue C | | | | Transcriptome reconstruction and functional analysis of eukaryotic marine plankton communities via high-throughput metagenomics and metatranscriptomics | Vorobev A, Dupouy M, Carradec Q, Delmont TO, Annamale A, Wincker P and Pelletier E | | | | Virus-host coexistence in phytoplankton through the genomic lens | Yau S, Krasovec M, Benites LF, Rombauts S, Groussin M, Vancaester E, Aury JM, Derelle E, Desdevises Y, Escande ML, Grimsley N, Guy J, Moreau H, Sanchez-Brosseau S, van de Peer Y, Vandepoele K, Gourbiere S and Piganeau G | | | | Discovering millions of plankton genomic markers from the Atlantic Ocean and the Mediterranean Sea | Arif M, Gauthier J, Sugier K, Iudicone D, Jaillon O, Wincker P, Peterlongo P and Madoui MA | | | | Recombination and Large Structural Variations Shape Interspecific Edible Bananas Genomes | Baurens FC, Martin G, Hervouet C, Salmon F, Yohome D, Ricci S, Rouard M, Habas R, Lemainque A, Yahiaoui N and D'Hont A | | | | Characterization of L-Carnitine Metabolism in Sinorhizobium meliloti | Bazire P, Perchat N, Darii E, Lechaplais C, Salanoubat M and Perret A | | | | Continuous Culture Adaptation of Methylobacterium extorquens AM1 and TK 0001 to Very High Methanol Concentrations | Belkhelfa S, Roche D, Dubois I, Berger A, Delmas VA, Cattolico L, Perret A, Labadie K, Perdereau AC, Darii E, Pateau E, de Berardinis V, Salanoubat M, Bouzon M and Doring V | | | | Single cell ecogenomics reveals mating types of individual cells and ssDNA viral infections in the smallest photosynthetic eukaryotes | Benites LF, Poulton N, Labadie K, Sieracki ME, Grimsleyl N and Piganeau G | | | | An evaluation of sequencing coverage and genotyping strategies to assess neutral and adaptive diversity | Benjelloun B, Boyer F, Streeter I, Zamani W, Engelen S, Alberti A, Alberto FJ, BenBati M, Ibnelbachyr M, Chentouf M, Bechchari A, Rezaei HR, Naderi S, Stella A, Chikhi A, Clarke L, Kijas J, Flicek P, Taberlet P and Pompanon F | | | | The Arginine Deiminase Operon Is Responsible for a Fitness Trade-Off in Extended-Spectrum-beta-Lactamase-Producing Strains of Escherichia coli | Billard-Pomares T, Clermont O, Castellanos M, Magdoud F, Royer G, Condamine B, Fouteau S, Barbo V, Roche D, Cruveiller S, Medigue C, Pognard D, Glodt J, Dion S, Rigal O, Picard B, Denamur E and Branger C | | | | Colistin resistance in Parisian inpatient faecal Escherichia coli as the result of two distinct evolutionary pathways | Bourrel AS, Poirel L, Royer G, Darty M, Vuillemin X, Kieffer N, Clermont O, Denamur E, Nordmann P, Decousser JW, Lafaurie M, Bercot B, Walewski V, Lescat M, Carbonnelle E, Ousser F, Idri N, Ricard JD, Landraud L, Le Dorze M, Jacquier H, Cambau E, Lepeule R, Gomart C and Grp IR | | | | Specialization of small non-conjugative plasmids in Escherichia coli according to their family types | Branger C, Ledda A, Billard-Pomares T, Doublet B, Barbe V, Roche D, Medigue C, Arlet G and Denamur E | | | | Meta-Omics Reveals Genetic Flexibility of Diatom Nitrogen Transporters in Response to Environmental Changes | Busseni G, Vieira FRJ, Amato A, Pelletier E, Karlusich JJP, Ferrante MI, Wincker P, Rogato A, Bowler C, Sanges R, Maiorano L, Chiurazzi M, d'Alcala MR, Caputi L and Iudicone D | | | | Community-Level Responses to Iron Availability in Open Ocean Plankton Ecosystems | Caputi L, Carradec Q, Eveillard D, Kirilovsky A, Pelletier E, Karlusich JJP, Vieira FRJ, Villar E, Chaffron S, Malviya S, Scalco E, Acinas SG, Alberti A, Aury JM, Benoiston AS, Bertrand A, Biard T, Bittner L, Boccara M, Brum JR, Brunet C, Busseni G, Carratala A, Claustre H, Coelho LP, Colin S, D'Aniello S, Da Silva C, Del Core M, Dore H, Gasparini S, Kokoszka F, Jamet JL, Lejeusne C, Lepoivre C, Lescot M, Lima-Mendez G, Lombard F, Lukes J, Maillet N, Madoui MA, Martinez E, Mazzocchi MG, Neou MB, Paz-Yepes J, Poulain J, Ramondenc S, Romagnan JB, Roux S, Manta DS, Sanges R, Speich S, Sprovieri M, Sunagawa S, Taillandier V, Tanaka A, Tirichine L, Trottier C, Uitz J, Veluchamy A, Vesela J, Vincent F, Yau S, Kandels-Lewis S, Searson S, Dimier C, Picheral M, Bork P, Boss E, De Vargas C, Follows MJ, Grimsley N, Guidi L, Hingamp P, Karsenti E, Sordino P, Stemmann L, Sullivan MB, Tagliabue A, Zingone A, Garczarek L, d'Ortenzio F, Testor P, Not F, d'Alcala MR, Wincker P, Bowler C, Iudicone D, Gorsky G, Jaillon O, Karp-Boss L, Krzic U, Ogata H, Pesant S, Raes J, Reynaud EG, Sardet C, Sieracki M, Velayoudon D, Weissenbach J and Tara Oceans C | | | | Assessing the viral content of uncultured picoeukaryotes in the global-ocean by single cell genomics | Castillo YM, Mangot JF, Benites LF, Logares R, Kuronishi M, Ogata H, Jaillon O, Massana R, Sebastian M and Vaque D | | | | ABC Transporters Required for Hexose Uptake by Clostridium phytofermentans | Cerisy T, Iglesias A, Rostain W, Boutard M, Pelle C, Perret A, Salanoubat M, Fierobe HP and Tolonen AC | | | | A Targetron-Recombinase System for Large-Scale Genome Engineering of Clostridia | Cerisy T, Rostain W, Chhun A, Boutard M, Salanoubat M and Tolonen AC | | | | 2-Deoxyribose-5-phosphate aldolase, a remarkably tolerant aldolase towards nucleophile substrates | Chambre D, Guerard-Helaine C, Darii E, Mariage A, Petit JL, Salanoubat M, de Berardinis V, Lemaire M and Helaine V | | | | Natural Chlordecone Degradation Revealed by Numerous Transformation Products Characterized in Key French West Indies Environmental Compartments | Chevallier ML, Della-Negra O, Chaussonnerie S, Barbance A, Muselet D, Lagarde F, Darii E, Ugarte E, Lescop E, Fonknechten N, Weissenbach J, Woignier T, Gallard JF, Vuilleumier S, Imfeld G, Le Paslier D and Saaidi PL | | | | Simplified in Vitro and in Vivo Bioaccess to Prenylated Compounds | Couillaud J, Rico J, Rubini A, Hamrouni T, Courvoisier-Dezord E, Petit JL, Mariage A, Darii E, Duquesne K, de Berardinis V and Iacazio G | | | | Cytonuclear interactions remain stable during allopolyploid evolution despite repeated whole-genome duplications in Brassica | de Carvalho JF, Lucas J, Deniot G, Falentin C, Filangi O, Gilet M, Legeai F, Lode M, Morice J, Trotoux G, Aury JM, Barbe V, Keller J, Snowdon R, He ZS, Denoeud F, Wincker P, Bancroft I, Chevre AM and Rousseau-Gueutin M | | | | The Synthetic Microbiology Caucus: a fresh channel for exploring new ideas, challenging conventional wisdom and fostering community projects | de Lorenzo V and Marliere P | | | | XszenFHal, a novel tryptophan 5-halogenase from Xenorhabdus szentirmaii | Domergue J, Erdmann D, Fossey-Jouenne A, Petit JL, Debard A, de Berardinis V, Vergne-Vaxelaire C and Zaparucha A | | | | RetroRules: a database of reaction rules for engineering biology | Duigou T, du Lac M, Carbonell P and Faulon JL | | | | Two large reciprocal translocations characterized in the disease resistance-rich burmannica genetic group of Musa acuminata | Dupouy M, Baurens FC, Derouault P, Hervouet C, Cardi C, Cruaud C, Istace B, Labadie K, Guiougou C, Toubi L, Salmon F, Mournet P, Rouard M, Yahiaoui N, Lemainque A, Martin G and D'Hont A | | | | Mixotrophic protists display contrasted biogeographies in the global ocean | Faure E, Not F, Benoiston AS, Labadie K, Bittner L and Ayata SD | | | | Development of a Sequence-Based Reference Physical Map of Pea (Pisum sativum L.) | Gali KK, Tar'an B, Madoui MA, van der Vossen E, van Oeveren J, Labadie K, Berges H, Bendahmane A, Lachagari RVB, Burstin J and Warkentin T | | | | RAR beta Agonist Drug (C286) Demonstrates Efficacy in a Pre-clinical Neuropathic Pain Model Restoring Multiple Pathways via DNA Repair Mechanisms | Goncalves MB, Moehlin J, Clarke E, Grist J, Hobbs C, Carr AM, Jack J, Mendoza-Parra MA and Corcoran JPT | | | | Expanding Tara Oceans Protocols for Underway, Ecosystemic Sampling of the Ocean-Atmosphere Interface During Tara Pacific Expedition (2016-2018) | Gorsky G, Bourdin G, Lombard F, Pedrotti ML, Audrain S, Bin N, Boss E, Bowler C, Cassar N, Caudan L, Chabot G, Cohen NR, Cron D, De Vargas C, Dolan JR, Douville E, Elineau A, Flores JM, Ghiglione JF, Haentjens N, Hertau M, John SG, Kelly RL, Koren I, Lin YJ, Marie D, Moulin C, Moucherie Y, Pesant S, Picheral M, Poulain J, Pujo-Pay M, Reverdin G, Romac S, Sullivan MB, Trainic M, Tressol M, Trouble R, Vardi A, Voolstra CR, Wincker P, Agostini S, Banaigs B, Boissin E, Forcioli D, Furla P, Galand PE, Gilson E, Reynaud S, Sunagawa S, Thomas OP, Thurber RLV, Zoccola D, Planes S, Allemand D, Karsenti E, Banaig B, Iwankow G, Beraud E, Djerbi N, McMind R, Ottaviani A, Rottinger E, Rouan A, Zamoum T, Flume BCC, Pogoreutz C, Rothig T, Ziegler M, Paoli L, Ruscheweyh HJ, Salazar G, Lang-Yona N, Conan P, Hochart C, Bourgois E, Lancelot J, Monmarche D, Karp-Boss L, Mitsuhashi G, Kitano Y, da Silva O, Lemee R, Cronin D, Sullivan M, Armstrong E, Aury JM, Barbe V, Belser C, Carradec Q, Labadie K, Le-Hoang J, Noel B, Klinges G, Vega-Thunder R, Bonnival E, Henry N, Miguel-Gorda M, Friedrich R, Lin Y, Filee J and Tara Pacific C | | | | Marine DNA Viral Macro- and Microdiversity from Pole to Pole | Gregory AC, Zayed AA, Conceicao-Neto N, Temperton B, Bolduc B, Alberti A, Ardyna M, Arkhipova K, Carmichael M, Cruaud C, Dimier C, Dominguez-Huerta G, Ferland J, Kandels S, Liu YX, Marec C, Pesant S, Picheral M, Pisarev S, Poulain J, Tremblay JE, Vik D, Babin M, Bowler C, Culley AI, De Vargas C, Dutilh BE, Ludicone D, Karp-Boss L, Roux S, Sunagawa S, Wincker P, Sullivan MB and Tara Oceans C | | | | Molecular analysis of methanogen populations and their interactions within anaerobic sludge digesters | Guermazi-Toumi S, Chouari R and Sghir A | | | | Enantioselective Synthesis of D- and L-alpha-Amino Acids by Enzymatic Transamination Using Glutamine as Smart Amine Donor | Heuson E, Charmantray F, Petit JL, de Berardinis V and Gefflaut T | | | | Discovery of new levansucrase enzymes with interesting properties and improved catalytic activity to produce levan and fructooligosaccharides | Hill A, Chen L, Mariage A, Petit JL, de Berardinis V and Karboune S | | | | Global Trends in Marine Plankton Diversity across Kingdoms of Life | Ibarbalz FM, Henry N, Brandao MC, Martini V, Busseni G, Byrne H, Coelho LP, Endo H, Gasol JM, Gregory AC, Mahe F, Rigonato J, Royo-Llonch M, Salazar G, Sanz-Saez I, Scalco E, Soviadan D, Zayed AA, Zingone A, Labadie K, Ferland J, Marec C, Kandels S, Picheral M, Dimier C, Poulain J, Pisarev S, Carmichael M, Pesant S, Acinas SG, Babin M, Bork P, Boss E, Bowler C, Cochrane G, de Vargas C, Follows M, Gorsky G, Grimsley N, Guidi L, Hingamp P, Iudicone D, Jaillon O, Karp-Boss L, Karsenti E, Not F, Ogata H, Poulton N, Raes J, Sardet C, Speich S, Stemmann L, Sullivan MB, Sunagawa S, Wincker P, Bopp L, Lombard F, Zinger L and Tara Oceans C | | | | Transcriptome and Volatilome Analysis During Growth of Brochothrix thermosphacta in Food: Role of Food Substrate and Strain Specificity for the Expression of Spoilage Functions | Illikoud N, Gohier R, Werner D, Barrachina C, Roche D, Jaffres E and Zagorec M | | | | "Microbial Ecotoxicology of Marine Plastic Debris: A Review on Colonization and Biodegradation by the ""Plastisphere""" | Jacquin J, Cheng JG, Odobel C, Pandin C, Conan P, Pujo-Pay M, Barbe V, Meistertzheim AL and Ghiglione JF | | | | An aerobic eukaryotic parasite with functional mitochondria that likely lacks a mitochondrial genome | John U, Lu YM, Wohlrab S, Groth M, Janouskovec J, Kohli GS, Mark FC, Bickmeyer U, Farhat S, Felder M, Frickenhaus S, Guillou L, Keeling PJ, Moustafa A, Porcel BM, Valentin K and Glockner G | | | | Biogeography of Soil Bacterial Networks along a Gradient of Cropping Intensity | Karimi B, Dequiedt S, Terrat S, Jolivet C, Arrouays D, Wincker P, Cruaud C, Bispo A, Prevost-Boure NC and Ranjard L | | | | mcr-9, an Inducible Gene Encoding an Acquired Phosphoethanolamine Transferase in Escherichia coli, and Its Origin | Kieffer N, Royer G, Decousser JW, Bourrel AS, Palmieri M, De La Rosa JMO, Jacquier H, Denamur E, Nordmann P and Poirel L | | | | Custom-made transcriptional biosensors for metabolic engineering | Koch M, Pandi A, Borkowski O, Batista AC and Faulon JL | | | | Metabolic reconstruction of the genome of candidate Desulfatiglans TRIP_1 and identification of key candidate enzymes for anaerobic phenanthrene degradation | Kraiselburd I, Bruls T, Heilmann G, Kaschani F, Kaiser M and Meckenstock RU | | | | A reference genome for pea provides insight into legume genome evolution | Kreplak J, Madoui MA, Capal P, Novak P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Berard A, Vrbova I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelova H, Milec Z, Vrana J, Lee H, Kougbeadjo A, Terezol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Dolezel J, Wincker P and Burstin J | | | | Sulfur metabolites that facilitate oceanic phytoplankton-bacteria carbon flux | Landa M, Burns AS, Durham BP, Esson K, Nowinski B, Sharma S, Vorobev A, Nielsen T, Kiene RP and Moran MA | | | | Achiral Hydroxypyruvaldehyde Phosphate as a Platform for Multi-Aldolases Cascade Synthesis of Diuloses and for a Quadruple Acetaldehyde Addition Catalyzed by 2-Deoxyribose-5-Phosphate Aldolases | Laurent V, Helaine V, Vergne-Vaxelaire C, Nauton L, Traikia M, Petit JL, Salanoubat M, de Berardinis V, Lemaire M and Guerard-Helaine C | | | | Exploration of Aldol Reactions Catalyzed by Stereoselective Pyruvate Aldolases with 2-Oxobutyric Acid as Nucleophile | Laurent V, Uzel A, Helaine V, Nauton L, Traikia M, Gefflaut T, Salanoubat M, de Berardinis V, Lemaire M and Guerard-Helaine C | | | | The genome of the jellyfish Clytia hemisphaerica and the evolution of the cnidarian life-cycle | Leclere L, Horin C, Chevalier S, Lapebie P, Dru P, Peron S, Jager M, Condamine T, Pottin K, Romano S, Steger J, Sinigaglia C, Barreau C, Artigas GQ, Ruggiero A, Fourrage C, Kraus JEM, Poulain J, Aury JM, Wincker P, Queinnec E, Technau U, Manuel M, Momose T, Houliston E and Copley RR | | | | On the Enzymatic Formation of Metal Base Pairs with Thiolated and pK(a)-Perturbed Nucleotides | Levi-Acobas F, Rothlisberger P, Sarac I, Marliere P, Herdewijn P and Hollenstein M | | | | Physiological and evolutionary implications of tetrameric photosystem I in cyanobacteria | Li M, Calteau A, Semchonok DA, Witt TA, Nguyen JT, Sassoon N, Boekema EJ, Whitelegge J, Gugger M and Bruce BD | | | | Comparative assessment of long-read error correction software applied to Nanopore RNA-sequencing data | Lima L, Marchet C, Caboche S, Da Silva C, Istace B, Aury J-M, Touzet H and Chikhi R | | | | Recognition of the persistent organic pollutant chlordecone by a hemicryptophane cage | Long A, Lefevre S, Guy L, Robert V, Dutasta JP, Chevallier ML, Della-Negra O, Saaidi PL and Martinez A | | | | Invading Escherichia coli Genetics with a Xenobiotic Nucleic Acid Carrying an Acyclic Phosphonate Backbone (ZNA) | Luo M, Groaz E, Froeyen M, Pezo V, Jaziri F, Leonczak P, Schepers G, Rozenski J, Marliere P and Herdewijn P | | | | Advantage of the F2:A1:B- IncF Pandemic Plasmid over IncC Plasmids in In Vitro Acquisition and Evolution of bla(CTX-M )Gene-Bearing Plasmids in Escherichia coli | Maherault AC, Kemble H, Magnan M, Gachet B, Roche D, Le Nagard H, Tenaillon O, Denamur E, Branger C and Landraud L | | | | De novo clustering of long reads by gene from transcriptomics data | Marchet C, Lecompte L, Da Silva C, Cruaud C, Aury JM, Nicolas J and Peterlongo P | | | | A family of native amine dehydrogenases for the asymmetric reductive amination of ketones | Mayol O, Bastard K, Beloti L, Frese A, Turkenburg JP, Petit JL, Mariage A, Debard A, Pellouin V, Perret A, de Berardinis V, Zaparucha A, Grogan G and Vergne-Vaxelaire C | | | | MicroScope-an integrated resource for community expertise of gene functions and comparative analysis of microbial genomic and metabolic data | Medigue C, Calteau A, Cruveiller S, Gachet M, Gautreau G, Josso A, Lajus A, Langlois J, Pereira H, Planel R, Roche D, Rollin J, Rouy Z and Vallenet D | | | | Tuning of the enzyme ratio in a neutral redox convergent cascade: A key approach for an efficient one-pot/two-step biocatalytic whole-cell system | Menil S, Petit JL, Courvoisier-Dezord E, Debard A, Pellouin V, Reignier T, Sergent M, Deyris V, Duquesne K, de Berardinis V and Alphand V | | | | Ectosymbiotic bacteria at the origin of magnetoreception in a marine protist | Monteil CL, Vallenet D, Menguy N, Benzerara K, Barbe V, Fouteau S, Cruaud C, Floriani M, Viollier E, Adryanczyk G, Leonhardt N, Faivre D, Pignol D, Lopez-Garcia P, Weld RJ and Lefevre CT | | | | Elucidation of Codon Usage Signatures across the Domains of Life | Novoa EM, Jungreis I, Jaillon O and Kellis M | | | | Phylogenomics using low-depth whole genome sequencing: A case study with the olive tribe | Olofsson JK, Cantera I, Van de Paer C, Hong-Wa C, Zedane L, Dunning LT, Alberti A, Christin PA and Besnard G | | | | Metabolic perceptrons for neural computing in biological systems | Pandi A, Koch M, Voyvodic PL, Soudier P, Bonnet J, Kushwaha M and Faulon JL | | | | "The Tara Pacific expedition-A pan-ecosystemic approach of the ""-omics"" complexity of coral reef holobionts across the Pacific Ocean" | Planes S, Allemand D, Agostini S, Banaigs B, Boissin E, Boss E, Bourdin G, Bowler C, Douville E, Flores JM, Forcioli D, Furla P, Galand PE, Ghiglione JF, Gilson E, Lombard F, Moulin C, Pesant S, Poulain J, Reynaud S, Romac S, Sullivan MB, Sunagawa S, Thomas OP, Trouble R, de Vargas C, Thurber RV, Voolstra CR, Wincker P, Zoccola D, Armstrong E, Audrain S, Aury JM, Banaig B, Barbe V, Belser C, Beraud E, Bonnival E, Bourgois E, Carradec Q, Cassar N, Cohen NR, Conan P, Cronin DR, da Silva O, Djerbi N, Dolan JR, Herta GD, Du J, Filee J, Friedrich R, Gorsky G, Guinther M, Haentjens N, Henry N, Hertau M, Hochart C, Hume BCC, Iwankow G, John SG, Karp-Boss L, Kelly RL, Kitano Y, Klinges G, Koren I, Labadie K, Lancelot J, Lang-Yona N, Le-Hoang J, Lemee R, Lin Y, Marie D, McMind R, Miguel-Gordo M, Trainic M, Monmarche D, Mucherie Y, Noel B, Ottaviani A, Paoli L, Pedrotti ML, Pogoreutz C, Pujo-Pay M, Reverdin G, Rothig T, Rottinger E, Rouan A, Ruscheweyh HJ, Salazar G, Vardi A, Vega-Thunder R, Zahed A, Zamoum T, Ziegler M and Tara Pacific C | | |
|