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Publications du Genoscope

Publié le 25 juin 2018
  
Convergent genomic signatures of domestication in sheep and goats
Alberto FJ, Boyer F, Orozco-terWengel P, Streeter I, Servin B, de Villemereuil P, Benjelloun B, Librado P, Biscarini F, Colli L, Barbato M, Zamani W, Alberti A, Engelen S, Stella A, Joost S, Ajmone-Marsan P, Negrini R, Orlando L, Rezaei HR, Naderi S, Clarke L, Flicek P, Wincker P, Coissac E, Kijas J, Tosser-Klopp G, Chikhi A, Bruford MW, Taberlet P and Pompanon F
Adaptation in toxic environments: comparative genomics of loci carrying antibiotic resistance genes derived from acid mine drainage waters
Arsene-Ploetze F, Chiboub O, Lievremont D, Farasin J, Freel KC, Fouteau S and Barbe V
Bacillus subtilis, the model Gram-positive bacterium: 20years of annotation refinement
Borriss R, Danchin A, Harwood CR, Medigue C, Rocha EPC, Sekowska A and Vallenet D
A global ocean atlas of eukaryotic genes
Carradec Q, Pelletier E, Da Silva C, Alberti A, Seeleuthner Y, Blanc-Mathieu R, Lima-Mendez G, Rocha F, Tirichine L, Labadie K, Kirilovsky A, Bertrand A, Engelen S, Madoui MA, Meheust R, Poulain J, Romac S, Richter DJ, Yoshikawa G, Dimier C, Kandels-Lewis S, Picheral M, Searson S, Jaillon O, Aury JM, Karsenti E, Sullivan MB, Sunagawa S, Bork P, Not F, Hingamp P, Raes J, Guidi L, Ogata H, de Vargas C, Iudicone D, Bowler C and Wincker P
Distinct Carbon Isotope Fractionation Signatures during Biotic and Abiotic Reductive Transformation of Chlordecone
Chevallier ML, Cooper M, Kummel S, Barbance A, Le Paslier D, Richnow HH, Saaidi PL and Adrian L
Parallels between experimental and natural evolution of legume symbionts
Clerissi C, Touchon M, Capela D, Tang MX, Cruveiller S, Parker MA, Moulin L, Masson-Boivin C and Rocha EPC
The Rise and Fall of African Rice Cultivation Revealed by Analysis of 246 New Genomes
Cubry P, Tranchant-Dubreuil C, Thuillet AC, Monat C, Ndjiondjop MN, Labadie K, Cruaud C, Engelen S, Scarcelli N, Rhone B, Burgarella C, Dupuy C, Larmande P, Wincker P, Francois O, Sabot F and Vigouroux Y
The Odyssey of the Ancestral Escherich Strain through Culture Collections: an Example of Allopatric Diversification
Desroches M, Royer G, Roche D, Mercier-Darty M, Vallenet D, Medigue C, Bastard K, Rodriguez C, Clermont O, Denamur E and Decousser JW
Vibrio tapetis Displays an Original Type IV Secretion System in Strains Pathogenic for Bivalve Molluscs
Dias GM, Bidault A, Le Chevalier P, Choquet G, Sarkissian CD, Orlando L, Medigue C, Barbe V, Mangenot S, Thompson CC, Thompson FL, Jacq A, Pichereau V and Paillard C
RecPhyloXML - a format for reconciled gene trees
Duchemin W, Gence G, Arigon Chifolleau A-M, Arvestad L, Bansal MS, Berry V, Boussau B, Chevenet F, Comte N, Davin AA, Dessimoz C, Dylus D, Hasic D, Mallo D, Planel R, Posada D, Scornavacca C, Szollosi G, Zhang L, Tannier E and Daubin V
Phylogeny and salt-tolerance of freshwater Nostocales strains: Contribution to their systematics and evolution
Duval C, Thomazeau S, Drelin Y, Yepremian C, Bouvy M, Couloux A, Troussellier M, Rousseau F and Bernard C
Neobodonids are dominant kinetoplastids in the global ocean
Flegontova O, Flegontov P, Malviya S, Poulain J, de Vargas C, Bowler C, Lukes J and Horak A
Enzymatic Cascade Reactions for the Synthesis of Chiral Amino Alcohols from L-lysine
Fossey-Jouenne A, Vergne-Vaxelaire C and Zaparucha A
Modulation of BACE1 Activity by Chemically Modified Aptamers
Gasse C, Zaarour M, Noppen S, Abramov M, Marliere P, Liekens S, De Strooper B and Herdewijn P
Genomics analysis of Aphanomyces spp. identifies a new class of oomycete effector associated with host adaptation
Gaulin E, Pel MJC, Camborde L, San-Clemente H, Courbier S, Dupouy MA, Lengelle J, Veyssiere M, Le Ru A, Grandjean F, Cordaux R, Moumen B, Gilbert C, Cano LM, Aury JM, Guy J, Wincker P, Bouchez O, Klopp C and Dumas B
Light color acclimation is a key process in the global ocean distribution of Synechococcus cyanobacteria
Grebert T, Dore H, Partensky F, Farrant GK, Boss ES, Picheral M, Guidi L, Pesant S, Scanlan DJ, Wincker P, Acinas SG, Kehoe DM and Garczarek L
Transcriptome Profiles of Nod Factor-independent Symbiosis in the Tropical Legume Aeschynomene evenia
Gully D, Czernic P, Cruveiller S, Mahe F, Longin C, Vallenet D, Francois P, Nidelet S, Rialle S, Giraud E, Arrighi JF, DasGupta M and Cartieaux F
An improved primer set and amplification protocol with increased specificity and sensitivity targeting the Symbiodinium ITS2 region
Hume BCC, Ziegler M, Poulain J, Pochon X, Romac S, Boissin E, De Vargas C, Planes S, Wincker P and Voolstra CR
Disentangling the Causes for Faster-X Evolution in Aphids
Jaquiery J, Peccoud J, Ouisse T, Legeai F, Prunier-Leterme N, Gouin A, Nouhaud P, Brisson JA, Bickel R, Purandare S, Poulain J, Battail C, Lemaitre C, Mieuzet L, Le Trionnaire G, Simon JC and Rispe C
Shared Nearest Neighbor Clustering in a Locality Sensitive Hashing Framework
Kanj S, Bruls T and Gazut S
Biogeography of soil bacteria and archaea across France
Karimi B, Terrat S, Dequiedt S, Saby NPA, Horrigue W, Lelievre M, Nowak V, Jolivet C, Arrouays D, Wincker P, Cruaud C, Bispo A, Maron P-A, Boure NCP and Ranjard L
Endocytosis-mediated siderophore uptake as a strategy for Fe acquisition in diatoms
Kazamia E, Sutak R, Paz-Yepes J, Dorrell RG, Vieira FRJ, Mach J, Morrissey J, Leon S, Lam F, Pelletier E, Camadro JM, Bowler C and Lesuisse E
Science Advances 4 (5), eaar4536, 2018
XNA ligation using T4 DNA ligase in crowding conditions
Kestemont D, Renders M, Leonczak P, Abramov M, Schepers G, Pinheiro VB, Rozenski J and Herdewijn P
Expansion of the SOS regulon of Vibrio cholerae through extensive transcriptome analysis and experimental validation
Krin E, Pierle SA, Sismeiro O, Jagla B, Dillies MA, Varet H, Irazoki O, Campoy S, Rouy Z, Cruveiller S, Medigue C, Coppee JY and Mazel D
Bmc Genomics 19 (), e373, 2018
Synthesis of Branched-Chain Sugars with a DHAP-Dependent Aldolase: Ketones are Electrophile Substrates of Rhamnulose-1-phosphate Aldolases
Laurent V, Darii E, Aujon A, Debacker M, Petit JL, Helaine V, Liptaj T, Breza M, Mariage A, Nauton L, Traikia M, Salanoubat M, Lemaire M, Guerard-Helaine C and de Berardinis V
Nanoplanktonic diatoms are globally overlooked but play a role in spring blooms and carbon export
Leblanc K, Queguiner B, Diaz F, Cornet V, Michel-Rodriguez M, de Madron XD, Bowler C, Malviya S, Thyssen M, Gregori G, Rembauville M, Grosso O, Poulain J, de Vargas C, Pujo-Pay M and Conan P
Diversity and evolution of the emerging Pandoraviridae family
Legendre M, Fabre E, Poirot O, Jeudy S, Lartigue A, Alempic JM, Beucher L, Philippe N, Bertaux L, Christo-Foroux E, Labadie K, Coute Y, Abergel C and Claverie JM
Adaptation of S. cerevisiae to Fermented Food Environments Reveals Remarkable Genome Plasticity and the Footprints of Domestication
Legras J-L, Galeote V, Bigey F, Camarasa C, Marsit S, Nidelet T, Sanchez I, Couloux A, Guy J, Franco-Duarte R, Marcet-Houben M, Gabaldon T, Schuller D, Sampaio JP and Dequin S
Phosphonomethyl Oligonucleotides as Backbone-Modified Artificial Genetic Polymers
Liu C, Cozens C, Jaziri F, Rozenski J, Marechal A, Dumbre S, Pezo V, Marliere P, Pinheiro VB, Groaz E and Herdewijn P
Analysis of the genomic basis of functional diversity in dinoflagellates using a transcriptome-based sequence similarity network
Meng A, Corre E, Probert I, Gutierrez-Rodriguez A, Siano R, Annamale A, Alberti A, Da Silva C, Wincker P, Le Crom S, Not F and Bittner L
A de novo approach to disentangle partner identity and function in holobiont systems
Meng A, Marchet C, Corre E, Peterlongo P, Alberti A, Da Silva C, Wincker P, Pelletier E, Probert I, Decelle J, Le Crom S, Not F and Bittner L
GROOLS: reactive graph reasoning for genome annotation through biological processes
Mercier J, Josso A, Medigue C and Vallenet D
Surface ocean metabarcoding confirms limited diversity in planktonic foraminifera but reveals unknown hyper-abundant lineages
Morard R, Garet-Delmas MJ, Mahe F, Romac S, Poulain J, Kucera M and de Vargas C
Division-Based, Growth Rate Diversity in Bacteria
Nana GYG, Ripoll C, Cabin-Flaman A, Gibouin D, Delaune A, Janniere L, Grancher G, Chagny G, Loutelier-Bourhis C, Lentzen E, Grysan P, Audinot JN and Norris V
Modeling trophic dependencies and exchanges among insects' bacterial symbionts in a host-simulated environment
Opatovsky I, Santos-Garcia D, Ruan ZP, Lahav T, Ofaim S, Mouton L, Barbe V, Jiang JD, Zchori-Fein E and Freilich S
A novel species of the marine cyanobacterium Acaryochloris with a unique pigment content and lifestyle
Partensky F, Six C, Ratin M, Garczarek L, Vaulot D, Probert I, Calteau A, Gourvil P, Marie D, Grebert T, Bouchier C, Le Panse S, Gachenot M, Rodriguez F and Garrido JL
Elucidation of the trigonelline degradation pathway reveals previously undescribed enzymes and metabolites
Perchat N, Saaidi PL, Darii E, Pelle C, Petit JL, Besnard-Gonnet M, de Berardinis V, Dupont M, Gimbernat A, Salanoubat M, Fischer C and Perret A
Genome evolution across 1,011 Saccharomyces cerevisiae isolates
Peter J, De Chiara M, Friedrich A, Yue JX, Pflieger D, Bergstrom A, Sigwalt A, Barre B, Freel K, Llored A, Cruaud C, Labadie K, Aury JM, Istace B, Lebrigand K, Barbry P, Engelen S, Lemainque A, Wincker P, Liti G and Schacherer J
Metabolic Recruitment and Directed Evolution of Nucleoside Triphosphate Uptake in Escherichia coli
Pezo V, Hassan C, Louis D, Sargueil B, Herdewijn P and Marliere P
Oak genome reveals facets of long lifespan
Plomion C, Aury J-M, Amselem J, Leroy T, Murat F, Duplessis S, Faye S, Francillonne N, Labadie K, Le Provost G, Lesur I, Bartholome J, Faivre-Rampant P, Kohler A, Leple J-C, Chantret N, Chen J, Dievart A, Alaeitabar T, Barbe V, Belser C, Berges H, Bodenes C, Bogeat-Triboulot M-B, Bouffaud M-L, Brachi B, Chancerel E, Cohen D, Couloux A, Da Silva C, Dossat C, Ehrenmann F, Gaspin C, Grima-Pettenati J, Guichoux E, Hecker A, Herrmann S, Hugueney P, Hummel I, Klopp C, Lalanne C, Lascoux M, Lasserre E, Lemainque A, Desprez-Loustau M-L, Luyten I, Madoui M-A, Mangenot S, Marchal C, Maumus F, Mercier J, Michotey C, Panaud O, Picault N, Rouhier N, Rue O, Rustenholz C, Salin F, Soler M, Tarkka M, Velt A, Zanne AE, Martin F, Wincker P, Quesneville H, Kremer A and Salse J
The Rosa genome provides new insights into the domestication of modern roses
Raymond O, Gouzy J, Just J, Badouin H, Verdenaud M, Lemainque A, Vergne P, Moja S, Choisne N, Pont C, Carrere S, Caissard JC, Couloux A, Cottret L, Aury JM, Szecsi J, Latrasse D, Madoui MA, Francois L, Fu XP, Yang SH, Dubois A, Piola F, Larrieu A, Perez M, Labadie K, Perrier L, Govetto B, Labrousse Y, Villand P, Bardoux C, Boltz V, Lopez-Roques C, Heitzler P, Vernoux T, Vandenbussche M, Quesneville H, Boualem A, Bendahmane A, Liu C, Le Bris M, Salse J, Baudino S, Benhamed M, Wincker P and Bendahmane M
Gene flow contributes to diversification of the major fungal pathogen Candida albicans
Ropars J, Maufrais C, Diogo D, Marcet-Houben M, Perin A, Sertour N, Mosca K, Permal E, Laval G, Bouchier C, Ma L, Schwartz K, Voelz K, May RC, Poulain J, Battail C, Wincker P, Borman AM, Chowdhary A, Fan S, Kim SH, Le Pape P, Romeo O, Shin JH, Gabaldon T, Sherlock G, Bougnoux ME and d'Enfert C
Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans
Seeleuthner Y, Mondy S, Lombard V, Carradec Q, Pelletier E, Wessner M, Leconte J, Mangot JF, Poulain J, Labadie K, Logares R, Sunagawa S, de Berardinis V, Salanoubat M, Dimier C, Kandels-Lewis S, Picheral M, Searson S, Pesant S, Poulton N, Stepanauskas R, Bork P, Bowler C, Hingamp P, Sullivan MB, Iudicone D, Massana R, Aury JM, Henrissat B, Karsenti E, Jaillon O, Sieracki M, de Vargas C, Wincker P and Tara Oceans C
Chitin distribution in the Oithona digestive and reproductive systems revealed by fluorescence microscopy
Sugier K, Vacherie B, Cornils A, Wincker P, Jamet JL and Madoui MA
The genomic and transcriptomic basis of the potential of Lactobacillus plantarum A6 to improve the nutritional quality of a cereal based fermented food
Turpin W, Weiman M, Guyot JP, Lajus A, Cruveiller S and Humblot C
Characterization of a thermotolerant ROK-type mannofructokinase from Streptococcus mitis: application to the synthesis of phosphorylated sugars
Vergne-Vaxelaire C, Mariage A, Petit JL, Fossey-Jouenne A, Guerard-Helaine C, Darii E, Debard A, Nepert S, Pellouin V, Lemaire M, Zaparucha A, Salanoubat M and de Berardinis V
The Ocean Gene Atlas: exploring the biogeography of plankton genes online
Villar E, Vannier T, Vernette C, Lescot M, Cuenca M, Alexandre A, Bachelerie P, Rosnet T, Pelletier E, Sunagawa S and Hingamp P
In vivo assimilation of one-carbon via a synthetic reductive glycine pathway in Escherichia coli
Yishai O, Bouzon M, Doring V and Bar-Even A
Status of coral reefs of Upolu (Independent State of Samoa) in the South West Pacific and recommendations to promote resilience and recovery of coastal ecosystems
Ziegler M, Quere G, Ghiglione JF, Iwankow G, Barbe V, Boissin E, Wincker P, Planes S and Voolstra CR
Microbial communities in pyrene amended soil-compost mixture and fertilized soil
Adam IKU, Duarte M, Pathmanathan J, Miltner A, Bruls T and Kastner M
Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition
Alberti A, Poulain J, Engelen S, Labadie K, Romac S, Ferrera I, Albini G, Aury JM, Belser C, Bertrand A, Cruaud C, Da Silva C, Dossat C, Gavory F, Gas S, Guy J, Haquelle M, Jacoby E, Jaillon O, Lemainque A, Pelletier E, Samson G, Wessner M, Acinas SG, Royo-Llonch M, Cornejo-Castillo FM, Logares R, Fernandez-Gomez B, Bowler C, Cochrane G, Amid C, Ten Hoopen P, De Vargas C, Grimsley N, Desgranges E, Kandels-Lewis S, Ogata H, Poulton N, Sieracki ME, Stepanauskas R, Sullivan MB, Brum JR, Duhaime MB, Poulos BT, Hurwitz BL, Pesant S, Karsenti E, Wincker P, Genoscope Tech T and Tara Oceans C
The cacao Criollo genome v2.0: an improved version of the genome for genetic and functional genomic studies
Argout X, Martin G, Droc G, Fouet O, Labadie K, Rivals E, Aury JM and Lanaud C
A new sequence data set of SSU rRNA gene for Scleractinia and its phylogenetic and ecological applications
Arrigoni R, Vacherie B, Benzoni F, Stefani F, Karsenti E, Jaillon O, Not F, Nunes F, Payri C, Wincker P and Barbe V
Mutations in ACTRT1 and its enhancer RNA elements lead to aberrant activation of Hedgehog signaling in inherited and sporadic basal cell carcinomas
Bal E, Park HS, Belaid-Choucair Z, Kayserili H, Naville M, Madrange M, Chiticariu E, Hadj-Rabia S, Cagnard N, Kuonen F, Bachmann D, Huber M, Le Gall C, Cote F, Hanein S, Rosti RO, Aslanger AD, Waisfisz Q, Bodemer C, Hermine O, Morice-Picard F, Labeille B, Caux F, Mazereeuw-Hautier J, Philip N, Levy N, Taieb A, Avril MF, Headon DJ, Gyapay G, Magnaldo T, Fraitag S, Crollius HR, Vabres P, Hohl D, Munnich A and Smahi A
Integrating transcriptional activity in genome-scale models of metabolism
Banos DT, Trebulle P and Elati M
Parallel evolution of non-homologous isofunctional enzymes in methionine biosynthesis
Bastard K, Perret A, Mariage A, Bessonnet T, Pinet-Turpault A, Petit JL, Darii E, Bazire P, Vergne-Vaxelaire C, Brewee C, Debard A, Pellouin V, Besnard-Gonnet M, Artiguenave F, Medigue C, Vallenet D, Danchin A, Zaparucha A, Weissenbach J, Salanoubat M and De Berardinis V
Biocatalytic Approaches towards the Synthesis of Chiral Amino Alcohols from Lysine: Cascade Reactions Combining alpha-Keto Acid Oxygenase Hydroxylation with Pyridoxal Phosphate- Dependent Decarboxylation
Baud D, Peruch O, Saaidi PL, Fossey A, Mariage A, Petit JL, Salanoubat M, Vergne-Vaxelaire C, de Berardinis V and Zaparucha A
Biogeography and diversity of Collodaria (Radiolaria) in the global ocean
Biard T, Bigeard E, Audic S, Poulain J, Gutierrez-Rodriguez A, Pesant S, Stemmann L and Not F
Conservation and diversity of the IrrE/DdrO-controlled radiation response in radiation-resistant Deinococcus bacteria
Blanchard L, Guerin P, Roche D, Cruveiller S, Pignol D, Vallenet D, Armengaud J and de Groot A
Hybridization and polyploidy enable genomic plasticity without sex in the most devastating plant-parasitic nematodes
Blanc-Mathieu R, Perfus-Barbeoch L, Aury JM, Da Rocha M, Gouzy J, Sallet E, Martin-Jimenez C, Bailly-Bechet M, Castagnone-Sereno P, Flot JF, Kozlowski DK, Cazareth J, Couloux A, Da Silva C, Guy J, Kim-Jo YJ, Rancurel C, Schiex T, Abad P, Wincker P and Danchin EGJ
A Synthetic Alternative to Canonical One-Carbon Metabolism
Bouzon M, Perret A, Loreau O, Delmas V, Perchat N, Weissenbach J, Taran F and Marliere P
Genome Sequence of the Dichloromethane-Degrading Bacterium Hyphomicrobium sp. Strain GJ21
Bringel F, Postema CP, Mangenot S, Bibi-Triki S, Chaignaud P, Farhan Ul Haque M, Gruffaz C, Hermon L, Louhichi Y, Maucourt B, Muller EEL, Nadalig T, Lajus A, Rouy Z, Medigue C, Barbe V, Janssen DB and Vuilleumier S
Recruitment of a Lineage-Specific Virulence Regulatory Pathway Promotes Intracellular Infection by a Plant Pathogen Experimentally Evolved into a Legume Symbiont
Capela D, Marchetti M, Clerissi C, Perrier A, Guetta D, Gris C, Valls M, Jauneau A, Cruveiller S, Rocha EPC and Masson-Boivin C
Untangling species identity in gastropods with polymorphic shells in the genus Bolma Risso, 1826 (Mollusca, Vetigastropoda)
Castelin M, Williams ST, Buge B, Maestrati P, Lambourdiere J, Ozawa T, Utge J, Couloux A, Alf A and Samadi S
Evolution of a Biomass-Fermenting Bacterium To Resist Lignin Phenolics
Cerisy T, Souterre T, Torres-Romero I, Boutard M, Dubois I, Patrouix J, Labadie K, Berrabah W, Salanoubat M, Doring V and Tolonen AC
Genomic and Transcriptomic Analysis of Growth-Supporting Dehalogenation of Chlorinated Methanes in Methylobacterium
Chaignaud P, Maucourt B, Weiman M, Alberti A, Kolb S, Cruveiller S, Vuilleumier S and Bringel F
Eukaryotic molecular diversity at different steps of the wastewater treatment plant process reveals more phylogenetic novel lineages
Chouari R, Leonard M, Bouali M, Guermazi S, Rahli N, Zrafi I, Morin L and Sghir A
Flipping chromosomes in deep-sea archaea
Cossu M, Badel C, Catchpole R, Gadelle D, Marguet E, Barbe V, Forterre P and Oberto J
Towards standards for human fecal sample processing in metagenomic studies
Costea PI, Zeller G, Sunagawa S, Pelletier E, Alberti A, Levenez F, Tramontano M, Driessen M, Hercog R, Jung FE, Kultima JR, Hayward MR, Coelho LP, Allen-Vercoe E, Bertrand L, Blaut M, Brown JRM, Carton T, Cools-Portier S, Daigneault M, Derrien M, Druesne A, de Vos WM, Finlay BB, Flint HJ, Guarner F, Hattori M, Heilig H, Luna RA, Vlieg JVH, Junick J, Klymiuk I, Langella P, Le Chatelier E, Mai V, Manichanh C, Martin JC, Mery C, Morita H, O'Toole PW, Orvain C, Patil KR, Penders J, Persson S, Pons N, Popova M, Salonen A, Saulnier D, Scott KP, Singh B, Slezak K, Veiga P, Versalovic J, Zhao LP, Zoetendal EG, Ehrlich SD, Dore J and Bork P
The Transcriptomes of Xiphinema index and Longidorus elongatus Suggest Independent Acquisition of Some Plant Parasitism Genes by Horizontal Gene Transfer in Early-Branching Nematodes
Danchin EGJ, Perfus-Barbeoch L, Rancurel C, Thorpe P, Da Rocha M, Bajew S, Neilson R, Sokolova E, Da Silva C, Guy J, Labadie K, Esmenjaud D, Helder J, Jones JT and Eves-van den Akker S
Meaning and consequence of the coexistence of competitive hydrogen bond/salt forms on the dissociation orientation of non-covalent complexes
Darii E, Alves S, Gimbert Y, Perret A and Tabet JC
Expanding the reaction space of aldolases using hydroxypyruvate as a nucleophilic substrate
de Berardinis V, Guerard-Helaine C, Darii E, Bastard K, Helaine V, Mariage A, Petit JL, Poupard N, Sanchez-Moreno I, Stam M, Gefflaut T, Salanoubat M and Lemaire M
Functional soil metagenomics: elucidation of polycyclic aromatic hydrocarbon degradation potential following 12 years of in situ bioremediation
Duarte M, Nielsen A, Camarinha-Silva A, Vilchez-Vargas R, Bruls T, Wos-Oxley ML, Jauregui R and Pieper DH
Structural Alteration of OmpR as a Source of Ertapenem Resistance in a CTX-M-15-Producing Escherichia coli O25b:H4 Sequence Type 131 Clinical Isolate
Dupont H, Choinier P, Roche D, Adiba S, Sookdeb M, Branger C, Denamur E and Mammeri H
An unusual strategy for the anoxic biodegradation of phthalate
Ebenau-Jehle C, Mergelsberg M, Fischer S, Bruls T, Jehmlich N, von Bergen M and Boll M
Base-Modified Nucleic Acids as a Powerful Tool for Synthetic Biology and Biotechnology
Eremeeva E, Abramov M, Margamuljana L and Herdewijn P
The 5-chlorouracil:7-deazaadenine base pair as an alternative to the dT:dA base pair
Eremeeva E, Abramov M, Marliere P and Herdewijn P
Carrageenan catabolism is encoded by a complex regulon in marine heterotrophic bacteria
Ficko-Blean E, Prechoux A, Thomas F, Rochat T, Larocque R, Zhu YT, Stam M, Genicot S, Jam M, Calteau A, Viart B, Ropartz D, Perez-Pascual D, Correc G, Matard-Mann M, Stubbs KA, Rogniaux H, Jeudy A, Barbeyron T, Medigue C, Czjzek M, Vallenet D, McBride MJ, Duchaud E and Michel G
High-Quality de Novo Genome Assembly of the Dekkera bruxellensis Yeast Using Nanopore MinION Sequencing
Fournier T, Gounot JS, Freel K, Cruaud C, Lemainque A, Aury JM, Wincker P, Schacherer J and Friedrich A
Genetic Architecture of a Rice Nested Association Mapping Population
Fragoso CA, Moreno M, Wang ZH, Heffelfinger C, Arbelaez LJ, Aguirre JA, Franco N, Romero LE, Labadie K, Zhao HY, Dellaporta SL and Lorieux M
Strand-specific transcriptomes of Enterohemorrhagic Escherichia coli in response to interactions with ground beef microbiota: interactions between microorganisms in raw meat
Galia W, Leriche F, Cruveiller S, Garnier C, Navratil V, Dubost A, Blanquet-Diot S and Thevenot-Sergentet D
Different waves of effector genes with contrasted genomic location are expressed by Leptosphaeria maculans during cotyledon and stem colonization of oilseed rape
Gervais J, Plissonneau C, Linglin J, Meyer M, Labadie K, Cruaud C, Fudal I, Rouxel T and Balesdent MH
Two genomes of highly polyphagous lepidopteran pests (Spodoptera frugiperda, Noctuidae) with different host-plant ranges
Gouin A, Bretaudeau A, Nam K, Gimenez S, Aury JM, Duvic B, Hilliou F, Durand N, Montagne N, Darboux I, Kuwar S, Chertemps T, Siaussat D, Bretschneider A, Mone Y, Ahn SJ, Hanniger S, Grenet ASG, Neunemann D, Maumus F, Luyten I, Labadie K, Xu W, Koutroumpa F, Escoubas JM, Llopis A, Maibeche-Coisne M, Salasc F, Tomar A, Anderson AR, Khan SA, Dumas P, Orsucci M, Guy J, Belser C, Alberti A, Noel B, Couloux A, Mercier J, Nidelet S, Dubois E, Liu NY, Boulogne I, Mirabeau O, Le Goff G, Gordon K, Oakeshott J, Consoli FL, Volkoff AN, Fescemyer HW, Marden JH, Luthe DS, Herrero S, Heckel DG, Wincker P, Kergoat GJ, Amselem J, Quesneville H, Groot AT, Jacquin-Joly E, Negre N, Lemaitre C, Legeai F, d'Alencon E and Fournier P
Stereoselective synthesis of gamma-hydroxy-alpha-amino acids through aldolase-transaminase recycling cascades
Guerard-Helaine C, Heuson E, Ndiaye M, Gourbeyre L, Lemaire M, Helaine V, Charmantray F, Petit JL, Salanoubat M, de Berardinis V and Gefflaut T
Complete Genome Sequence of Bradyrhizobium sp. ORS285, a Photosynthetic Strain Able To Establish Nod Factor-Dependent or Nod Factor-Independent Symbiosis with Aeschynomene Legumes
Gully D, Teulet A, Busset N, Nouwen N, Fardoux J, Rouy Z, Vallenet D, Cruveiller S and Giraud E
Geography and life history traits account for the accumulation of cryptic diversity among Indo-West Pacific coral reef fishes
Hubert N, Dettai A, Pruvost P, Cruaud C, Kulbicki M, Myers RF and Borsa P
de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer
Istace B, Friedrich A, d'Agata L, Faye S, Payen E, Beluche O, Caradec C, Davidas S, Cruaud C, Liti G, Lemainque A, Engelen S, Wincker P, Schacherer J and Aury JM
Biotin-independent strains of Escherichia coli for enhanced streptavidin production
Jeschek M, Bahls MO, Schneider V, Marliere P, Ward TR and Panke S
The chimeric nature of the genomes of marine magnetotactic coccoid-ovoid bacteria defines a novel group of Proteobacteria
Ji BY, Zhang SD, Zhang WJ, Rouy Z, Alberto F, Santini CL, Mangenot S, Gagnot S, Philippe N, Pradel N, Zhang LC, Tempel S, Li Y, Medigue C, Henrissat B, Coutinho PM, Barbe V, Talla E and Wu LF
Molecular structures enumeration and virtual screening in the chemical space with RetroPath2.0
Koch M, Duigou T, Carbonell P and Faulon JL
Overcoming the membrane barrier: Recruitment of gamma-glutamyl transferase for intracellular release of metabolic cargo from peptide vectors
Kuenzl T, Sroka M, Srivastava P, Herdewijn P, Marliere P and Panke S
Deciphering the Theobroma cacao self-incompatibility system: from genomics to diagnostic markers for self-compatibility
Lanaud C, Fouet O, Legavre T, Lopes U, Sounigo O, Eyango MC, Mermaz B, Da Silva MR, Solorzano RGL, Argout X, Gyapay G, Ebaiarrey HE, Colonges K, Sanier C, Rivallan R, Mastin G, Cryer N, Boccara M, Verdeil JL, Mousseni IBE, Gramacho KP and Clement D
Ancestral Genome Estimation Reveals the History of Ecological Diversification in Agrobacterium
Lassalle F, Penel R, Penel S, Chapulliot D, Barbe V, Dubost A, Calteau A, Vallenet D, Mornico D, Bigot T, Gueguen L, Vial L, Muller D, Daubin V and Nesme X
Extensive recent secondary contacts between four European white oak species
Leroy T, Roux C, Villate L, Bodenes C, Romiguier J, Paiva JAP, Dossat C, Aury JM, Plomion C and Kremer A
One-pot, two-step cascade synthesis of naturally rare L-erythro (3S,4S) ketoses by coupling a thermostable transaminase and transketolase
Lorilliere M, De Sousa M, Bruna F, Heuson E, Gefflaut T, de Berardinis V, Saravanan T, Yi D, Fessner WD, Charmantray F and Hecquet L
New insights into global biogeography, population structure and natural selection from the genome of the epipelagic copepod Oithona
Madoui MA, Poulain J, Sugier K, Wessner M, Noel B, Berline L, Labadie K, Cornils A, Blanco-Bercial L, Stemmann L, Jamet JL and Wincker P
Accessing the genomic information of unculturable oceanic picoeukaryotes by combining multiple single cells
Mangot JF, Logares R, Sanchez P, Latorre F, Seeleuthner Y, Mondy S, Sieracki ME, Jaillon O, Wincker P, de Vargas C and Massana R
Experimental evolution of rhizobia may lead to either extra- or intracellular symbiotic adaptation depending on the selection regime
Marchetti M, Clerissi C, Yousfi Y, Gris C, Bouchez O, Rocha E, Cruveiller S, Jauneau A, Capela D and Masson-Boivin C
Evolution of the Banana Genome (Musa acuminata) Is Impacted by Large Chromosomal Translocations
Martin G, Carreel F, Coriton O, Hervouet C, Cardi C, Derouault P, Roques D, Salmon F, Rouard M, Sardos J, Labadie K, Baurens FC and D'Hont A
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