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Publications du Genoscope

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Publié le 17 octobre 2017
  
Microbial communities in pyrene amended soil-compost mixture and fertilized soil
Adam IKU, Duarte M, Pathmanathan J, Miltner A, Bruls T and Kastner M
Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition
Alberti A, Poulain J, Engelen S, Labadie K, Romac S, Ferrera I, Albini G, Aury JM, Belser C, Bertrand A, Cruaud C, Da Silva C, Dossat C, Gavory F, Gas S, Guy J, Haquelle M, Jacoby E, Jaillon O, Lemainque A, Pelletier E, Samson G, Wessner M, Acinas SG, Royo-Llonch M, Cornejo-Castillo FM, Logares R, Fernandez-Gomez B, Bowler C, Cochrane G, Amid C, Ten Hoopen P, De Vargas C, Grimsley N, Desgranges E, Kandels-Lewis S, Ogata H, Poulton N, Sieracki ME, Stepanauskas R, Sullivan MB, Brum JR, Duhaime MB, Poulos BT, Hurwitz BL, Pesant S, Karsenti E, Wincker P, Genoscope Tech T and Tara Oceans C
The cacao Criollo genome v2.0: an improved version of the genome for genetic and functional genomic studies
Argout X, Martin G, Droc G, Fouet O, Labadie K, Rivals E, Aury JM and Lanaud C
Molecular phylogenetics of Sarcolaenaceae (Malvales), Madagascar's largest endemic plant family (vol 182, pg 729, 2016)
Aubriot X, Soulebeau A, Haevermans T, Schatz GE, Cruaud C and Lowry PP
Mutations in ACTRT1 and its enhancer RNA elements lead to aberrant activation of Hedgehog signaling in inherited and sporadic basal cell carcinomas
Bal E, Park HS, Belaid-Choucair Z, Kayserili H, Naville M, Madrange M, Chiticariu E, Hadj-Rabia S, Cagnard N, Kuonen F, Bachmann D, Huber M, Le Gall C, Cote F, Hanein S, Rosti RO, Aslanger AD, Waisfisz Q, Bodemer C, Hermine O, Morice-Picard F, Labeille B, Caux F, Mazereeuw-Hautier J, Philip N, Levy N, Taieb A, Avril MF, Headon DJ, Gyapay G, Magnaldo T, Fraitag S, Crollius HR, Vabres P, Hohl D, Munnich A and Smahi A
Parallel evolution of non-homologous isofunctional enzymes in methionine biosynthesis
Bastard K, Perret A, Mariage A, Bessonnet T, Pinet-Turpault A, Petit JL, Darii E, Bazire P, Vergne-Vaxelaire C, Brewee C, Debard A, Pellouin V, Besnard-Gonnet M, Artiguenave F, Medigue C, Vallenet D, Danchin A, Zaparucha A, Weissenbach J, Salanoubat M and De Berardinis V
Parallel evolution of non-homologous isofunctional enzymes in methionine biosynthesis (vol 13, pg 858, 2017)
Bastard K, Perret A, Mariage A, Bessonnet T, Pinet-Turpault A, Petit JL, Darii E, Bazire P, Vergne-Vaxelaire C, Brewee C, Debard A, Pellouin V, Besnard-Gonnet M, Artiguenave F, Medigue C, Vallenet D, Danchin A, Zaparucha A, Weissenbach J, Salanoubat M and de Berardinis V
Biocatalytic Approaches towards the Synthesis of Chiral Amino Alcohols from Lysine: Cascade Reactions Combining alpha-Keto Acid Oxygenase Hydroxylation with Pyridoxal Phosphate- Dependent Decarboxylation
Baud D, Peruch O, Saaidi PL, Fossey A, Mariage A, Petit JL, Salanoubat M, Vergne-Vaxelaire C, de Berardinis V and Zaparucha A
Biogeography and diversity of Collodaria (Radiolaria) in the global ocean
Biard T, Bigeard E, Audic S, Poulain J, Gutierrez-Rodriguez A, Pesant S, Stemmann L and Not F
Conservation and diversity of the IrrE/DdrO-controlled radiation response in radiation-resistant Deinococcus bacteria
Blanchard L, Guerin P, Roche D, Cruveiller S, Pignol D, Vallenet D, Armengaud J and de Groot A
Hybridization and polyploidy enable genomic plasticity without sex in the most devastating plant-parasitic nematodes
Blanc-Mathieu R, Perfus-Barbeoch L, Aury JM, Da Rocha M, Gouzy J, Sallet E, Martin-Jimenez C, Bailly-Bechet M, Castagnone-Sereno P, Flot JF, Kozlowski DK, Cazareth J, Couloux A, Da Silva C, Guy J, Kim-Jo YJ, Rancurel C, Schiex T, Abad P, Wincker P and Danchin EGJ
A Synthetic Alternative to Canonical One-Carbon Metabolism
Bouzon M, Perret A, Loreau O, Delmas V, Perchat N, Weissenbach J, Taran F and Marliere P
Genome Sequence of the Dichloromethane-Degrading Bacterium Hyphomicrobium sp. Strain GJ21
Bringel F, Postema CP, Mangenot S, Bibi-Triki S, Chaignaud P, Farhan Ul Haque M, Gruffaz C, Hermon L, Louhichi Y, Maucourt B, Muller EEL, Nadalig T, Lajus A, Rouy Z, Medigue C, Barbe V, Janssen DB and Vuilleumier S
Recruitment of a Lineage-Specific Virulence Regulatory Pathway Promotes Intracellular Infection by a Plant Pathogen Experimentally Evolved into a Legume Symbiont
Capela D, Marchetti M, Clerissi C, Perrier A, Guetta D, Gris C, Valls M, Jauneau A, Cruveiller S, Rocha EPC and Masson-Boivin C
Untangling species identity in gastropods with polymorphic shells in the genus Bolma Risso, 1826 (Mollusca, Vetigastropoda)
Castelin M, Williams ST, Buge B, Maestrati P, Lambourdiere J, Ozawa T, Utge J, Couloux A, Alf A and Samadi S
Evolution of a Biomass-Fermenting Bacterium To Resist Lignin Phenolics
Cerisy T, Souterre T, Torres-Romero I, Boutard M, Dubois I, Patrouix J, Labadie K, Berrabah W, Salanoubat M, Doring V and Tolonen AC
Genomic and Transcriptomic Analysis of Growth-Supporting Dehalogenation of Chlorinated Methanes in Methylobacterium
Chaignaud P, Maucourt B, Weiman M, Alberti A, Kolb S, Cruveiller S, Vuilleumier S and Bringel F
Eukaryotic molecular diversity at different steps of the wastewater treatment plant process reveals more phylogenetic novel lineages
Chouari R, Leonard M, Bouali M, Guermazi S, Rahli N, Zrafi I, Morin L and Sghir A
Flipping chromosomes in deep-sea archaea
Cossu M, Badel C, Catchpole R, Gadelle D, Marguet E, Barbe V, Forterre P and Oberto J
Towards standards for human fecal sample processing in metagenomic studies
Costea PI, Zeller G, Sunagawa S, Pelletier E, Alberti A, Levenez F, Tramontano M, Driessen M, Hercog R, Jung F-E, Kultima JR, Hayward MR, Coelho LP, Allen-Vercoe E, Bertrand L, Blaut M, Brown JRM, Carton T, Cools-Portier S, Daigneault M, Derrien M, Druesne A, de Vos WM, Finlay BB, Flint HJ, Guarner F, Hattori M, Heilig H, Luna RA, van Hylckama Vlieg J, Junick J, Klymiuk I, Langella P, Le Chatelier E, Mai V, Manichanh C, Martin JC, Mery C, Morita H, O'Toole PW, Orvain C, Patil KR, Penders J, Persson S, Pons N, Popova M, Salonen A, Saulnier D, Scott KP, Singh B, Slezak K, Veiga P, Versalovic J, Zhao L, Zoetendal EG, Ehrlich SD, Dore J and Bork P
Meaning and consequence of the coexistence of competitive hydrogen bond/salt forms on the dissociation orientation of non-covalent complexes
Darii E, Alves S, Gimbert Y, Perret A and Tabet JC
Expanding the reaction space of aldolases using hydroxypyruvate as a nucleophilic substrate
de Berardinis V, Guerard-Helaine C, Darii E, Bastard K, Helaine V, Mariage A, Petit JL, Poupard N, Sanchez-Moreno I, Stam M, Gefflaut T, Salanoubat M and Lemaire M
Functional soil metagenomics: elucidation of polycyclic aromatic hydrocarbon degradation potential following 12 years of in situ bioremediation
Duarte M, Nielsen A, Camarinha-Silva A, Vilchez-Vargas R, Bruls T, Wos-Oxley ML, Jauregui R and Pieper DH
Structural Alteration of OmpR as a Source of Ertapenem Resistance in a CTX-M-15-Producing Escherichia coli O25b:H4 Sequence Type 131 Clinical Isolate
Dupont H, Choinier P, Roche D, Adiba S, Sookdeb M, Branger C, Denamur E and Mammeri H
An unusual strategy for the anoxic biodegradation of phthalate
Ebenau-Jehle C, Mergelsberg M, Fischer S, Bruls T, Jehmlich N, von Bergen M and Boll M
Base-Modified Nucleic Acids as a Powerful Tool for Synthetic Biology and Biotechnology
Eremeeva E, Abramov M, Margamuljana L and Herdewijn P
The 5-chlorouracil:7-deazaadenine base pair as an alternative to the dT:dA base pair
Eremeeva E, Abramov M, Marliere P and Herdewijn P
High-Quality de Novo Genome Assembly of the Dekkera bruxellensis Yeast Using Nanopore MinION Sequencing
Fournier T, Gounot JS, Freel K, Cruaud C, Lemainque A, Aury JM, Wincker P, Schacherer J and Friedrich A
Genetic Architecture of a Rice Nested Association Mapping Population
Fragoso CA, Moreno M, Wang ZH, Heffelfinger C, Arbelaez LJ, Aguirre JA, Franco N, Romero LE, Labadie K, Zhao HY, Dellaporta SL and Lorieux M
Strand-specific transcriptomes of Enterohemorrhagic Escherichia coli in response to interactions with ground beef microbiota: interactions between microorganisms in raw meat
Galia W, Leriche F, Cruveiller S, Garnier C, Navratil V, Dubost A, Blanquet-Diot S and Thevenot-Sergentet D
Different waves of effector genes with contrasted genomic location are expressed by Leptosphaeria maculans during cotyledon and stem colonization of oilseed rape
Gervais J, Plissonneau C, Linglin J, Meyer M, Labadie K, Cruaud C, Fudal I, Rouxel T and Balesdent MH
Two genomes of highly polyphagous lepidopteran pests (Spodoptera frugiperda, Noctuidae) with different host-plant ranges
Gouin A, Bretaudeau A, Nam K, Gimenez S, Aury JM, Duvic B, Hilliou F, Durand N, Montagne N, Darboux I, Kuwar S, Chertemps T, Siaussat D, Bretschneider A, Mone Y, Ahn SJ, Hanniger S, Grenet ASG, Neunemann D, Maumus F, Luyten I, Labadie K, Xu W, Koutroumpa F, Escoubas JM, Llopis A, Maibeche-Coisne M, Salasc F, Tomar A, Anderson AR, Khan SA, Dumas P, Orsucci M, Guy J, Belser C, Alberti A, Noel B, Couloux A, Mercier J, Nidelet S, Dubois E, Liu NY, Boulogne I, Mirabeau O, Le Goff G, Gordon K, Oakeshott J, Consoli FL, Volkoff AN, Fescemyer HW, Marden JH, Luthe DS, Herrero S, Heckel DG, Wincker P, Kergoat GJ, Amselem J, Quesneville H, Groot AT, Jacquin-Joly E, Negre N, Lemaitre C, Legeai F, d'Alencon E and Fournier P
Stereoselective synthesis of gamma-hydroxy-alpha-amino acids through aldolase-transaminase recycling cascades
Guerard-Helaine C, Heuson E, Ndiaye M, Gourbeyre L, Lemaire M, Helaine V, Charmantray F, Petit JL, Salanoubat M, de Berardinis V and Gefflaut T
Complete Genome Sequence of Bradyrhizobium sp. ORS285, a Photosynthetic Strain Able To Establish Nod Factor-Dependent or Nod Factor-Independent Symbiosis with Aeschynomene Legumes
Gully D, Teulet A, Busset N, Nouwen N, Fardoux J, Rouy Z, Vallenet D, Cruveiller S and Giraud E
de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer
Istace B, Friedrich A, d'Agata L, Faye S, Payen E, Beluche O, Caradec C, Davidas S, Cruaud C, Liti G, Lemainque A, Engelen S, Wincker P, Schacherer J and Aury JM
Biotin-independent strains of Escherichia coli for enhanced streptavidin production
Jeschek M, Bahls MO, Schneider V, Marliere P, Ward TR and Panke S
The chimeric nature of the genomes of marine magnetotactic coccoid-ovoid bacteria defines a novel group of Proteobacteria
Ji BY, Zhang SD, Zhang WJ, Rouy Z, Alberto F, Santini CL, Mangenot S, Gagnot S, Philippe N, Pradel N, Zhang LC, Tempel S, Li Y, Medigue C, Henrissat B, Coutinho PM, Barbe V, Talla E and Wu LF
Shared Nearest Neighbor Clustering in a Locality Sensitive Hashing Framework
Kanj S, Bruls T and Gazut S
Overcoming the membrane barrier: Recruitment of gamma-glutamyl transferase for intracellular release of metabolic cargo from peptide vectors
Kuenzl T, Sroka M, Srivastava P, Herdewijn P, Marliere P and Panke S
Deciphering the Theobroma cacao self-incompatibility system: from genomics to diagnostic markers for self-compatibility
Lanaud C, Fouet O, Legavre T, Lopes U, Sounigo O, Eyango MC, Mermaz B, Da Silva MR, Solorzano RGL, Argout X, Gyapay G, Ebaiarrey HE, Colonges K, Sanier C, Rivallan R, Mastin G, Cryer N, Boccara M, Verdeil JL, Mousseni IBE, Gramacho KP and Clement D
Extensive recent secondary contacts between four European white oak species
Leroy T, Roux C, Villate L, Bodenes C, Romiguier J, Paiva JAP, Dossat C, Aury JM, Plomion C and Kremer A
One-pot, two-step cascade synthesis of naturally rare L-erythro (3S,4S) ketoses by coupling a thermostable transaminase and transketolase
Lorilliere M, De Sousa M, Bruna F, Heuson E, Gefflaut T, de Berardinis V, Saravanan T, Yi D, Fessner WD, Charmantray F and Hecquet L
New insights into global biogeography, population structure and natural selection from the genome of the epipelagic copepod Oithona
Madoui MA, Poulain J, Sugier K, Wessner M, Noel B, Berline L, Labadie K, Cornils A, Blanco-Bercial L, Stemmann L, Jamet JL and Wincker P
Accessing the genomic information of unculturable oceanic picoeukaryotes by combining multiple single cells
Mangot JF, Logares R, Sanchez P, Latorre F, Seeleuthner Y, Mondy S, Sieracki ME, Jaillon O, Wincker P, de Vargas C and Massana R
Experimental evolution of rhizobia may lead to either extra- or intracellular symbiotic adaptation depending on the selection regime
Marchetti M, Clerissi C, Yousfi Y, Gris C, Bouchez O, Rocha E, Cruveiller S, Jauneau A, Capela D and Masson-Boivin C
Evolution of the Banana Genome (Musa acuminata) Is Impacted by Large Chromosomal Translocations
Martin G, Carreel F, Coriton O, Hervouet C, Cardi C, Derouault P, Roques D, Salmon F, Rouard M, Sardos J, Labadie K, Baurens FC and D'Hont A
MicroScope-an integrated resource for community expertise of gene functions and comparative analysis of microbial genomic and metabolic data
Medigue C, Calteau A, Cruveiller S, Gachet M, Gautreau G, Josso A, Lajus A, Langlois J, Pereira H, Planel R, Roche D, Rollin J, Rouy Z and Vallenet D
Impact of biotic and abiotic factors on the expression of fungal effector-encoding genes in axenic growth conditions
Meyer M, Bourras S, Gervais J, Labadie K, Cruaud C, Balesdent MH and Rouxel T
De Novo Assemblies of Three Oryza glaberrima Accessions Provide First Insights about Pan-Genome of African Rices
Monat C, Pera B, Ndjiondjop MN, Sow M, Tranchant-Dubreuil C, Bastianelli L, Ghesquiere A and Sabot F
An antimicrobial peptide-resistant minor subpopulation of Photorhabdus luminescens is responsible for virulence
Mouammine A, Pages S, Lanois A, Gaudriault S, Jubelin G, Bonabaud M, Cruveiller S, Dubois E, Roche D, Legrand L, Brillard J and Givaudan A
Phylogeny and diversification of the cloud forest Morpho sulkowskyi group (Lepidoptera, Nymphalidae) in the evolving Andes
Nattier R, Capdevielle-Dulac C, Cassilde C, Couloux A, Cruaud C, Lachaume G, Lamas G, Silvain JF and Blandin P
Insights into the Planktothrix genus: Genomic and metabolic comparison of benthic and planktic strains
Pancrace C, Barny MA, Ueoka R, Calteau A, Scalvenzi T, Pedron J, Barbe V, Piel J, Humbert JF and Gugger M
Rearranged Biosynthetic Gene Cluster and Synthesis of Hassallidin E in Planktothrix serta PCC 8927
Pancrace C, Jokela J, Sassoon N, Ganneau C, Desnos-Ollivier M, Wahlsten M, Hurnisto A, Calteau A, Bay S, Fewer DP, Sivonen K and Gugger M
Interactions of the Bacillus subtilis DnaE polymerase with replisomal proteins modulate its activity and fidelity
Paschalis V, Le Chatelier E, Green M, Kepes F, Soultanas P and Janniere L
DNA Adenine Methyltransferase (Dam) Overexpression Impairs Photorhabdus luminescens Motility and Virulence
Payelleville A, Lanois A, Gislard M, Dubois E, Roche D, Cruveiller S, Givaudan A and Brillard J
The Complete Genome Sequence of the Fish Pathogen Tenacibaculum maritimum Provides Insights into Virulence Mechanisms
Perez-Pascual D, Lunazzi A, Magdelenat G, Rouy Z, Roulet A, Lopez-Roques C, Larocque R, Barbeyron T, Gobet A, Michel G, Bernardet JF and Duchaud E
Activity screening of environmental metagenomic libraries reveals novel carboxylesterase families
Popovic A, Hai T, Tchigvintsev A, Hajighasemi M, Nocek B, Khusnutdinova AN, Brown G, Glinos J, Flick R, Skarina T, Chernikova TN, Yim V, Bruls T, Le Paslier D, Yakimov MM, Joachimiak A, Ferrer M, Golyshina OV, Savchenko A, Golyshin PN and Yakunin AF
A spectral algorithm for fast de novo layout of uncorrected long nanopore reads
Recanati A, Bruls T and d'Aspremont A
Genomic Characterization of Flavobacterium psychrophilum Serotypes and Development of a Multiplex PCR-Based Serotyping Scheme
Rochat T, Fujiwara-Nagata E, Calvez S, Dalsgaard I, Madsen L, Calteau A, Lunazzi A, Nicolas P, Wiklund T, Bernardet JF and Duchaud E
On the enzymatic incorporation of an imidazole nucleotide into DNA
Rothlisberger P, Levi-Acobas F, Sarac I, Marliere P, Herdewijn P and Hollenstein M
Construction and characterization of a BAC library for functional genomics in Xenopus tropicalis
Spirhanzlova P, Dhorne-Pollet S, Fellah JS, Da Silva C, Tlapakova T, Labadie K, Weissenbach J, Poulain J, Jaffredo T, Wincker P, Krylov V and Pollet N
Fungal genome and mating system transitions facilitated by chromosomal translocations involving intercentromeric recombination
Sun S, Yadav V, Billmyre RB, Cuomo CA, Nowrousian M, Wang LY, Souciet JL, Boekhout T, Porcel B, Wincker P, Granek JA, Sanyal K and Heitman J
The metagenomic data life-cycle: standards and best practices
ten Hoopen P, Finn RD, Bongo LA, Corre E, Fosso B, Meyer F, Mitchell A, Pelletier E, Pesole G, Santamaria M, Willassen NP and Cochrane G
Comparative Genome Analysis Provides Insights into Both the Lifestyle of Acidithiobacillus ferrivorans Strain CF27 and the Chimeric Nature of the Iron-Oxidizing Acidithiobacilli Genomes
Tran TTT, Mangenot S, Magdelenat G, Payen E, Rouy Z, Belahbib H, Grail BM, Johnson DB, Bonnefoy V and Talla E
MicroScope in 2017: an expanding and evolving integrated resource for community expertise of microbial genomes
Vallenet D, Calteau A, Cruveiller S, Gachet M, Lajus A, Josso A, Mercier J, Renaux A, Rollin J, Rouy Z, Roche D, Scarpelli C and Medigue C
A patchwork pathway for oxygenase-independent degradation of side chain containing steroids
Warnke M, Jacoby C, Jung T, Agne M, Mergelsberg M, Starke R, Jehmlich N, von Bergen M, Richnow H-H, Bruls T and Boll M
A single three-dimensional chromatin compartment in amphioxus indicates a stepwise evolution of vertebrate Hox bimodal regulation
Acemel RD, Tena JJ, Irastorza-Azcarate I, Marletaz F, Gomez-Marin C, de la Calle-Mustienes E, Bertrand S, Diaz SG, Aldea D, Aury JM, Mangenot S, Holland PWH, Devos DP, Maeso I, Escriva H and Gomez-Skarmeta JL
In planta comparative transcriptomics of host-adapted strains of Ralstonia solanacearum
Ailloud F, Lowe TM, Robene I, Cruveiller S, Allen C and Prior P
The complete mitochondrial genome of Acanthastrea maxima (Cnidaria, Scleractinia, Lobophylliidae)
Arrigoni R, Vacherie B, Benzoni F and Barbe V
A new sequence data set of SSU rRNA gene for Scleractinia and its phylogenetic and ecological applications
Arrigoni R, Vacherie B, Benzoni F, Stefani F, Karsenti E, Jaillon O, Not F, Nunes F, Payri C, Wincker P and Barbe V
Molecular phylogenetics of Sarcolaenaceae (Malvales), Madagascar's largest endemic plant family
Aubriot X, Soulebeau A, Haevermans T, Schatz GE, Cruaud C and Lowry PP
Habitat and taxon as driving forces of carbohydrate catabolism in marine heterotrophic bacteria: example of the model algae-associated bacterium Zobellia galactanivorans Dsij(T)
Barbeyron T, Thomas F, Barbe V, Teeling H, Schenowitz C, Dossat C, Goesmann A, Leblanc C, Glockner FO, Czjzek M, Amann R and Michel G
The revisited genome of Pseudomonas putida KT2440 enlightens its value as a robust metabolic chassis
Belda E, van Heck RGA, Lopez-Sanchez MJ, Cruveiller S, Barbe V, Fraser C, Klenk HP, Petersen J, Morgat A, Nikel PI, Vallenet D, Rouy Z, Sekowska A, dos Santos V, de Lorenzo V, Danchin A and Medigue C
Polysaccharide utilisation loci of Bacteroidetes from two contrasting open ocean sites in the North Atlantic
Bennke CM, Kruger K, Kappelmann L, Huang SX, Gobet A, Schuler M, Barbe VE, Fuchs BM, Michel G, Teeling H and Amann RI
Comparative Genomics between Two Xenorhabdus bovienii Strains Highlights Differential Evolutionary Scenarios within an Entomopathogenic Bacterial Species
Bisch G, Ogier JC, Medigue C, Rouy Z, Vincent S, Tailliez P, Givaudan A and Gaudriault S
Global repositioning of transcription start sites in a plant-fermenting bacterium
Boutard M, Ettwiller L, Cerisy T, Alberti A, Labadie K, Salanoubat M, Schildkraut I and Tolonen AC
Reference Transcriptomes and Detection of Duplicated Copies in Hexaploid and Allododecaploid Spartina Species (Poaceae)
Boutte J, de Carvalho JF, Rousseau-Gueutin M, Poulain J, Da Silva C, Wincker P, Ainouche M and Salmon A
Draft Genome Sequence of Campylobacter jejuni Bf, an Atypical Strain Able To Grow under Aerobiosis
Bronnec V, Haddad N, Cruveiller S, Hernould M, Tresse O and Zagorec M
Adhesion, Biofilm Formation, and Genomic Features of Campylobacter jejuni Bf, an Atypical Strain Able to Grow under Aerobic Conditions
Bronnec V, Turonova H, Bouju A, Cruveiller S, Rodrigues R, Demnerova K, Tresse O, Haddad N and Zagorec M
Microbial Degradation of a Recalcitrant Pesticide: Chlordecone
Chaussonnerie S, Saaidi PL, Ugarte E, Barbance A, Fossey A, Barbe V, Gyapay G, Bruls T, Chevalier M, Couturat L, Fouteau S, Muselet D, Pateau E, Cohen GN, Fonknechten N, Weissenbach J and Le Paslier D
Cyanobacterial symbionts diverged in the late Cretaceous towards lineage-specific nitrogen fixation factories in single-celled phytoplankton
Cornejo-Castillo FM, Cabello AM, Salazar G, Sanchez-Baracaldo P, Lima-Mendez G, Hingamp P, Alberti A, Sunagawa S, Bork P, de Vargas C, Raes J, Bowler C, Wincker P, Zehr JP, Gasol JM, Massana R and Acinas SG
Permanent draft genome sequence of the probiotic strain Propionibacterium freudenreichii CIRM-BIA 129 (ITG P20)
Falentin H, Deutsch SM, Loux V, Hammani A, Buratti J, Parayre S, Chuat V, Barbe V, Aury JM, Jan G and Le Loir Y
Delineating ecologically significant taxonomic units from global patterns of marine picocyanobacteria
Farrant GK, Dore H, Cornejo-Castillo FM, Partensky F, Ratin M, Ostrowski M, Pitt FD, Wincker P, Scanlan DJ, Iudicone D, Acinas SG and Garczarek L
Extreme Diversity of Diplonemid Eukaryotes in the Ocean
Flegontova O, Flegontov P, Malviya S, Audic S, Wincker P, de Vargas C, Bowler C, Lukes J and Horak A
Benthic protists: the under-charted majority
Forster D, Dunthorn M, Mahe F, Dolan JR, Audic S, Bass D, Bittner L, Boutte C, Christen R, Claverie JM, Decelle J, Edvardsen B, Egge E, Eikrem W, Gobet A, Kooistra W, Logares R, Massana R, Montresor M, Not F, Ogata H, Pawlowski J, Pernice MC, Romac S, Shalchian-Tabrizi K, Simon N, Richards TA, Santini S, Sarno D, Siano R, Vaulot D, Wincker P, Zingone A, de Vargas C and Stoeck T
Microbial community structure associated with the high loading anaerobic codigestion of olive mill and abattoir wastewaters
Gannoun H, Omri I, Chouari R, Khelifi E, Keskes S, Godon JJ, Hamdi M, Sghir A and Bouallagui H
Complete Genome Sequence of Bacillus methylotrophicus Strain B25, a Potential Plant Growth-Promoting Rhizobacterium
Gerbore J, Brutel A, Lemainque A, Mairey B, Medigue C, Vallenet D, Lefort F and Grizard D
Genome announcements 4 (2), , 2016
A scalable assembly-free variable selection algorithm for biomarker discovery from metagenomes
Gkanogiannis A, Gazut S, Salanoubat M, Kanj S and Bruls T
Complete Genome Sequence of Mycoplasma mycoides subsp. mycoides T1/44, a Vaccine Strain against Contagious Bovine Pleuropneumonia
Gourgues G, Barre A, Beaudoing E, Weber J, Magdelenat G, Barbe V, Schieck E, Jores J, Vashee S, Blanchard A, Lartigue C and Sirand-Pugnet P
Plankton networks driving carbon export in the oligotrophic ocean
Guidi L, Chaffron S, Bittner L, Eveillard D, Larhlimi A, Roux S, Darzi Y, Audic S, Berline L, Brum JR, Coelho LP, Espinoza JCI, Malviya S, Sunagawa S, Dimier C, Kandels-Lewis S, Picheral M, Poulain J, Searson S, Stemmann L, Not F, Hingamp P, Speich S, Follows M, Karp-Boss L, Boss E, Ogata H, Pesant S, Weissenbach J, Wincker P, Acinas SG, Bork P, de Vargas C, Iudicone D, Sullivan MB, Raes J, Karsenti E, Bowler C, Gorsky G and Tara Oceans Consortium C
Continuous colorimetric screening assays for the detection of specific l- or d-alpha-amino acid transaminases in enzyme libraries
Heuson E, Petit JL, Debard A, Job A, Charmantray F, de Berardinis V and Gefflaut T
Identification of an Alternative Splicing Product of the Otx2 Gene Expressed in the Neural Retina and Retinal Pigmented Epithelial Cells
Kole C, Berdugo N, Da Silva C, Ait-Ali N, Millet-Puel G, Pagan D, Blond F, Poidevin L, Ripp R, Fontaine V, Wincker P, Zack DJ, Sahel JA, Poch O and Leveillard T
Global patterns of pelagic dinoflagellate diversity across protist size classes unveiled by metabarcoding
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Implication of the suberin pathway in adaptation to waterlogging and hypertrophied lenticels formation in pedunculate oak (Quercus robur L.)
Le Provost G, Lesur I, Lalanne C, Da Silva C, Labadie K, Aury JM, Leple JC and Plomion C
Comparative Genomic Analysis of Drechmeria coniospora Reveals Core and Specific Genetic Requirements for Fungal Endoparasitism of Nematodes
Lebrigand K, He LD, Thakur N, Arguel MJ, Polanowska J, Henrissat B, Record E, Magdelenat G, Barbe V, Raffaele S, Barbry P and Ewbank JJ
Reverse transcriptase genes are highly abundant and transcriptionally active in marine plankton assemblages
Lescot M, Hingamp P, Kojima KK, Villar E, Romac S, Veluchamy A, Boccara M, Jaillon O, Iudicone D, Bowler C, Wincker P, Claverie JM and Ogata H
MaGuS: a tool for quality assessment and scaffolding of genome assemblies with Whole Genome Profiling (TM) Data
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Insights into global diatom distribution and diversity in the world's ocean
Malviya S, Scalco E, Audic S, Vincenta F, Veluchamy A, Poulain J, Wincker P, Iudicone D, de Vargas C, Bittner L, Zingone A and Bowler C
"Improvement of the banana ""Musa acuminata"" reference sequence using NGS data and semi-automated bioinformatics methods"
Martin G, Baurens FC, Droc G, Rouard M, Cenci A, Kilian A, Hastie A, Dolezel J, Aury JM, Alberti A, Carreel F and D'Hont A
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