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Génomique et Biochimie du Métabolisme



Publié le 7 décembre 2018

Purification and Characterization of Nit, a Robust Thermostable Nitrilase From
Bessonnet T, Mariage A, Petit JL, Pellouin V, Debard A, Zaparucha A, Vergne-Vaxelaire C and de Berardinis V
Sequence-independent RNA sensing and DNA targeting by a split domain CRISPR-Cas12a gRNA switch
Collins SP, Rostain W, Liao CY and Beisel CL
One Step Forward in Exploration of Class II Pyruvate Aldolases Nucleophile and Electrophile Substrate Specificity
Gastaldi C, Tagne RN, Laurent V, Helaine V, Petit JL, Traikia M, de Berardinis V, Lemaire M and Guerard-Helaine C
A zero inflated log-normal model for inference of sparse microbial association networks
Prost V, Gazut S and Bruls T
Nondestructive enzymatic deamination enables single-molecule long-read amplicon sequencing for the determination of 5-methylcytosine and 5-hydroxymethylcytosine at single-base resolution
Sun ZY, Vaisvila R, Hussong LM, Yan B, Baum C, Saleh L, Samaranayake M, Guan SX, Dai N, Correa IR, Pradhan S, Davis TB, Evans TC and Ettwiller LM
Nitrilase immobilization and transposition from a micro-scale batch to a continuous process increase the nicotinic acid productivity
Teepakorn C, Zajkoska P, Cwicklinski G, De Berardinis V, Zaparucha A, Nonglaton G and Anxionnaz-Minvielle Z
Genetic Analysis of Citrobacter sp.86 Reveals Involvement of Corrinoids in Chlordecone and Lindane Biotransformations
Barbance A, Della-Negra O, Chaussonnerie S, Delmas V, Muselet D, Ugarte E, Saaidi PL, Weissenbach J, Fischer C, Le Paslier D and Fonknechten N
Transformation of the recalcitrant pesticide chlordecone by Desulfovibrio sp.86 with a switch from ring-opening dechlorination to reductive sulfidation activity
Della-Negra O, Chaussonnerie S, Fonknechten N, Barbance A, Muselet D, Martin DE, Fouteau S, Fischer C, Saaidi PL and Le Paslier D
Channeling C1 Metabolism toward S-Adenosylmethionine-Dependent Conversion of Estrogens to Androgens in Estrogen-Degrading Bacteria
Jacoby C, Krull J, Andexer J, Jehmlich N, von Bergen M, Bruls T and Boll M
Binning unassembled short reads based on k-mer abundance covariance using sparse coding
Kyrgyzov O, Prost V, Gazut S, Farcy B and Bruls T
Pyruvate Aldolases Catalyze Cross-Aldol Reactions between Ketones: Highly Selective Access to Multi-Functionalized Tertiary Alcohols
Laurent V, Gourbeyre L, Uzel A, Helaine V, Nauton L, Traikia M, de Berardinis V, Salanoubat M, Gefflaut T, Lemaire M and Guerard-Helaine C
The class II benzoyl-coenzyme A reductase complex from the sulfate-reducing Desulfosarcina cetonica
Anselmann SEL, Loffler C, Stark HJ, Jehmlich N, von Bergen M, Bruls T and Boll M
Characterization of L-Carnitine Metabolism in Sinorhizobium meliloti
Bazire P, Perchat N, Darii E, Lechaplais C, Salanoubat M and Perret A
Continuous Culture Adaptation of Methylobacterium extorquens AM1 and TK 0001 to Very High Methanol Concentrations
Belkhelfa S, Roche D, Dubois I, Berger A, Delmas VA, Cattolico L, Perret A, Labadie K, Perdereau AC, Darii E, Pateau E, de Berardinis V, Salanoubat M, Bouzon M and Doring V
ABC Transporters Required for Hexose Uptake by Clostridium phytofermentans
Cerisy T, Iglesias A, Rostain W, Boutard M, Pelle C, Perret A, Salanoubat M, Fierobe HP and Tolonen AC
A Targetron-Recombinase System for Large-Scale Genome Engineering of Clostridia
Cerisy T, Rostain W, Chhun A, Boutard M, Salanoubat M and Tolonen AC
2-Deoxyribose-5-phosphate aldolase, a remarkably tolerant aldolase towards nucleophile substrates
Chambre D, Guerard-Helaine C, Darii E, Mariage A, Petit JL, Salanoubat M, de Berardinis V, Lemaire M and Helaine V
Natural Chlordecone Degradation Revealed by Numerous Transformation Products Characterized in Key French West Indies Environmental Compartments
Chevallier ML, Della-Negra O, Chaussonnerie S, Barbance A, Muselet D, Lagarde F, Darii E, Ugarte E, Lescop E, Fonknechten N, Weissenbach J, Woignier T, Gallard JF, Vuilleumier S, Imfeld G, Le Paslier D and Saaidi PL
Metabolic reconstruction of the genome of candidate Desulfatiglans TRIP_1 and identification of key candidate enzymes for anaerobic phenanthrene degradation
Kraiselburd I, Bruls T, Heilmann G, Kaschani F, Kaiser M and Meckenstock RU
Achiral Hydroxypyruvaldehyde Phosphate as a Platform for Multi-Aldolases Cascade Synthesis of Diuloses and for a Quadruple Acetaldehyde Addition Catalyzed by 2-Deoxyribose-5-Phosphate Aldolases
Laurent V, Helaine V, Vergne-Vaxelaire C, Nauton L, Traikia M, Petit JL, Salanoubat M, de Berardinis V, Lemaire M and Guerard-Helaine C
Exploration of Aldol Reactions Catalyzed by Stereoselective Pyruvate Aldolases with 2-Oxobutyric Acid as Nucleophile
Laurent V, Uzel A, Helaine V, Nauton L, Traikia M, Gefflaut T, Salanoubat M, de Berardinis V, Lemaire M and Guerard-Helaine C
Recognition of the persistent organic pollutant chlordecone by a hemicryptophane cage
Long A, Lefevre S, Guy L, Robert V, Dutasta JP, Chevallier ML, Della-Negra O, Saaidi PL and Martinez A
A family of native amine dehydrogenases for the asymmetric reductive amination of ketones
Mayol O, Bastard K, Beloti L, Frese A, Turkenburg JP, Petit JL, Mariage A, Debard A, Pellouin V, Perret A, de Berardinis V, Zaparucha A, Grogan G and Vergne-Vaxelaire C
Exploring natural biodiversity to expand access to microbial terpene synthesis
Rico J, Duquesne K, Petit JL, Mariage A, Darii E, Peruch F, de Berardinis V and Iacazio G
De novo structure determination of 3-((3-aminopropyl)amino)-4-hydroxybenzoic acid, a novel and abundant metabolite in Acinetobacter baylyi ADP1
Thomas M, Stuani L, Darii E, Lechaplais C, Pateau E, Tabet JC, Salanoubat M, Saaidi PL and Perret A
Complete Genome Sequence of the Facultative Methylotroph Methylobacterium extorquens TK 0001 Isolated from Soil in Poland
Belkhelfa S, Labadie K, Cruaud C, Aury J-M, Roche D, Bouzon M, Salanoubat M and Doring V
Fermentative Spirochaetes mediate necromass recycling in anoxic hydrocarbon-contaminated habitats
Dong XY, Greening C, Bruls T, Conrad R, Guo K, Blaskowski S, Kaschani F, Kaiser M, Abu Lain N and Meckenstock RU
Screening and Characterization of Novel Polyesterases from Environmental Metagenomes with High Hydrolytic Activity against Synthetic Polyesters
Hajighasemi M, Tchigvintsev A, Nocek B, Flick R, Popovic A, Hai T, Khusnutdinova AN, Brown G, Xu XH, Cui H, Anstett J, Chernikova TN, Bruls T, Le Paslier D, Yakimov MM, Joachimiak A, Golyshina OV, Savchenko A, Golyshin PN, Edwards EA and Yakunin AF
Anaerobic degradation of phenanthrene by a sulfate-reducing enrichment culture
Himmelberg AM, Bruls T, Farmani Z, Weyrauch P, Barthel G, Schrader W and Meckenstock RU
Shared Nearest Neighbor Clustering in a Locality Sensitive Hashing Framework
Kanj S, Bruls T and Gazut S
Synthesis of Branched-Chain Sugars with a DHAP-Dependent Aldolase: Ketones are Electrophile Substrates of Rhamnulose-1-phosphate Aldolases
Laurent V, Darii E, Aujon A, Debacker M, Petit JL, Helaine V, Liptaj T, Breza M, Mariage A, Nauton L, Traikia M, Salanoubat M, Lemaire M, Guerard-Helaine C and de Berardinis V
Elucidation of the trigonelline degradation pathway reveals previously undescribed enzymes and metabolites
Perchat N, Saaidi PL, Darii E, Pelle C, Petit JL, Besnard-Gonnet M, de Berardinis V, Dupont M, Gimbernat A, Salanoubat M, Fischer C and Perret A
Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans
Seeleuthner Y, Mondy S, Lombard V, Carradec Q, Pelletier E, Wessner M, Leconte J, Mangot JF, Poulain J, Labadie K, Logares R, Sunagawa S, de Berardinis V, Salanoubat M, Dimier C, Kandels-Lewis S, Picheral M, Searson S, Pesant S, Poulton N, Stepanauskas R, Bork P, Bowler C, Hingamp P, Sullivan MB, Iudicone D, Massana R, Aury JM, Henrissat B, Karsenti E, Jaillon O, Sieracki M, de Vargas C, Wincker P and Tara Oceans C
Characterization of a thermotolerant ROK-type mannofructokinase from Streptococcus mitis: application to the synthesis of phosphorylated sugars
Vergne-Vaxelaire C, Mariage A, Petit JL, Fossey-Jouenne A, Guerard-Helaine C, Darii E, Debard A, Nepert S, Pellouin V, Lemaire M, Zaparucha A, Salanoubat M and de Berardinis V
Microbial communities in pyrene amended soil-compost mixture and fertilized soil
Adam IKU, Duarte M, Pathmanathan J, Miltner A, Bruls T and Kastner M
Parallel evolution of non-homologous isofunctional enzymes in methionine biosynthesis
Bastard K, Perret A, Mariage A, Bessonnet T, Pinet-Turpault A, Petit JL, Darii E, Bazire P, Vergne-Vaxelaire C, Brewee C, Debard A, Pellouin V, Besnard-Gonnet M, Artiguenave F, Medigue C, Vallenet D, Danchin A, Zaparucha A, Weissenbach J, Salanoubat M and De Berardinis V
Biocatalytic Approaches towards the Synthesis of Chiral Amino Alcohols from Lysine: Cascade Reactions Combining alpha-Keto Acid Oxygenase Hydroxylation with Pyridoxal Phosphate- Dependent Decarboxylation
Baud D, Peruch O, Saaidi PL, Fossey A, Mariage A, Petit JL, Salanoubat M, Vergne-Vaxelaire C, de Berardinis V and Zaparucha A
A Synthetic Alternative to Canonical One-Carbon Metabolism
Bouzon M, Perret A, Loreau O, Delmas V, Perchat N, Weissenbach J, Taran F and Marliere P
Evolution of a Biomass-Fermenting Bacterium To Resist Lignin Phenolics
Cerisy T, Souterre T, Torres-Romero I, Boutard M, Dubois I, Patrouix J, Labadie K, Berrabah W, Salanoubat M, Doring V and Tolonen AC
Meaning and consequence of the coexistence of competitive hydrogen bond/salt forms on the dissociation orientation of non-covalent complexes
Darii E, Alves S, Gimbert Y, Perret A and Tabet JC
Expanding the reaction space of aldolases using hydroxypyruvate as a nucleophilic substrate
de Berardinis V, Guerard-Helaine C, Darii E, Bastard K, Helaine V, Mariage A, Petit JL, Poupard N, Sanchez-Moreno I, Stam M, Gefflaut T, Salanoubat M and Lemaire M
Functional soil metagenomics: elucidation of polycyclic aromatic hydrocarbon degradation potential following 12 years of in situ bioremediation
Duarte M, Nielsen A, Camarinha-Silva A, Vilchez-Vargas R, Bruls T, Wos-Oxley ML, Jauregui R and Pieper DH
An unusual strategy for the anoxic biodegradation of phthalate
Ebenau-Jehle C, Mergelsberg M, Fischer S, Bruls T, Jehmlich N, von Bergen M and Boll M
Stereoselective synthesis of gamma-hydroxy-alpha-amino acids through aldolase-transaminase recycling cascades
Guerard-Helaine C, Heuson E, Ndiaye M, Gourbeyre L, Lemaire M, Helaine V, Charmantray F, Petit JL, Salanoubat M, de Berardinis V and Gefflaut T
Activity screening of environmental metagenomic libraries reveals novel carboxylesterase families
Popovic A, Hai T, Tchigvintsev A, Hajighasemi M, Nocek B, Khusnutdinova AN, Brown G, Glinos J, Flick R, Skarina T, Chernikova TN, Yim V, Bruls T, Le Paslier D, Yakimov MM, Joachimiak A, Ferrer M, Golyshina OV, Savchenko A, Golyshin PN and Yakunin AF
A spectral algorithm for fast de novo layout of uncorrected long nanopore reads
Recanati A, Bruls T and d'Aspremont A
A patchwork pathway for oxygenase-independent degradation of side chain containing steroids
Warnke M, Jacoby C, Jung T, Agne M, Mergelsberg M, Starke R, Jehmlich N, von Bergen M, Richnow HH, Bruls T and Boll M
Global repositioning of transcription start sites in a plant-fermenting bacterium
Boutard M, Ettwiller L, Cerisy T, Alberti A, Labadie K, Salanoubat M, Schildkraut I and Tolonen AC
Microbial Degradation of a Recalcitrant Pesticide: Chlordecone
Chaussonnerie S, Saaidi PL, Ugarte E, Barbance A, Fossey A, Barbe V, Gyapay G, Bruls T, Chevalier M, Couturat L, Fouteau S, Muselet D, Pateau E, Cohen GN, Fonknechten N, Weissenbach J and Le Paslier D
A scalable assembly-free variable selection algorithm for biomarker discovery from metagenomes
Gkanogiannis A, Gazut S, Salanoubat M, Kanj S and Bruls T
Asymmetric reductive amination by a wild-type amine dehydrogenase from the thermophilic bacteria Petrotoga mobilis
Mayol O, David S, Darii E, Debard A, Mariage A, Pellouin V, Petit JL, Salanoubat M, de Berardinis V, Zaparucha A and Vergne-Vaxelaire C
Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies
Plomion C, Aury JM, Amselem J, Alaeitabar T, Barbe V, Belser C, Berges H, Bodenes C, Boudet N, Boury C, Canaguier A, Couloux A, Da Silva C, Duplessis S, Ehrenmann F, Estrada-Mairey B, Fouteau S, Francillonne N, Gaspin C, Guichard C, Klopp C, Labadie K, Lalanne C, Le Clainche I, Leple JC, Le Provost G, Leroy T, Lesur I, Martin F, Mercier J, Michotey C, Murat F, Salin F, Steinbach D, Faivre-Rampant P, Wincker P, Salse J, Quesneville H and Kremer A
Toolbox for Protein Structure Prediction
Roche DB and McGuffin LJ
Genome Mining for Innovative Biocatalysts: New Dihydroxyacetone Aldolases for the Chemist's Toolbox
Guerard-Helaine C, de Berardinis V, Besnard-Gonnet M, Darii E, Debacker M, Debard A, Fernandes C, Helaine V, Mariage A, Pellouin V, Perret A, Petit JL, Sancelme M, Lemaire M and Salanoubat M
Genome and Transcriptome of Clostridium phytofermentans, Catalyst for the Direct Conversion of Plant Feedstocks to Fuels
Petit E, Coppi MV, Hayes JC, Tolonen AC, Warnick T, Latouf WG, Amisano D, Biddle A, Mukherjee S, Ivanova N, Lykidis A, Land M, Hauser L, Kyrpides N, Henrissat B, Lau J, Schnell DJ, Church GM, Leschine SB and Blanchard JL
An assessment of the amount of untapped fold level novelty in under-sampled areas of the tree of life
Roche DB and Bruls T
The enzymatic nature of an anonymous protein sequence cannot reliably be inferred from superfamily level structural information alone
Roche DB and Bruls T
Fungal lysis by a soil bacterium fermenting cellulose
Tolonen AC, Cerisy T, El-Sayyed H, Boutard M, Salanoubat M and Church GM
Physiology, Genomics, and Pathway Engineering of an Ethanol-Tolerant Strain of Clostridium phytofermentans
Tolonen AC, Zuroff TR, Ramya M, Boutard M, Cerisy T and Curtis WR
Revealing the hidden functional diversity of an enzyme family
Bastard K, Smith AAT, Vergne-Vaxelaire C, Perret A, Zaparucha A, De Melo-Minardi R, Mariage A, Boutard M, Debard A, Lechaplais C, Pelle C, Pellouin V, Perchat N, Petit JL, Kreimeyer A, Medigue C, Weissenbach J, Artiguenave F, De Berardinis V, Vallenet D and Salanoubat M
Synthesis of Mono- and Dihydroxylated Amino Acids with New alpha-Ketoglutarate-Dependent Dioxygenases: Biocatalytic Oxidation of C-H Bonds
Baud D, Saaidi PL, Monfleur A, Harari M, Cuccaro J, Fossey A, Besnard M, Debard A, Mariage A, Pellouin V, Petit JL, Salanoubat M, Weissenbach J, de Berardinis V and Zaparucha A
Large alpha-aminonitrilase activity screening of nitrilase superfamily members: Access to conversion and enantiospecificity by LC-MS
Bordier F, Stam M, Darii E, Tricot S, Fossey A, Rohault J, Debard A, Mariage A, Pellouin V, Petit JL, Perret A, Vallenet D, Salanoubat M, Weissenbach J, Vergne-Vaxelaire C, de Berardinis V and Zaparucha A
Validation of RetroPath, a computer-aided design tool for metabolic pathway engineering
Feher T, Planson AG, Carbonell P, Fernandez-Castane A, Grigoras I, Dariy E, Perret A and Faulon JL
Draft Genome Sequence of Propane- and Butane-Oxidizing Actinobacterium Rhodococcus ruber IEGM 231
Ivshina IB, Kuyukina MS, Krivoruchko AV, Barbe V and Fischer C
An integrated catalog of reference genes in the human gut microbiome
Li J, Jia H, Cai X, Zhong H, Feng Q, Sunagawa S, Arumugam M, Kultima JR, Prifti E, Nielsen T, Juncker AS, Manichanh C, Chen B, Zhang W, Levenez F, Wang J, Xu X, Xiao L, Liang S, Zhang D, Zhang Z, Chen W, Zhao H, Al-Aama JY, Edris S, Yang H, Wang J, Hansen T, Nielsen HB, Brunak S, Kristiansen K, Guarner F, Pedersen O, Dore J, Ehrlich SD, Bork P, Wang J and Meta HITC
Stereochemistry and Conformation of Skyllamycin, a Non-Ribosomally Synthesized Peptide from Streptomyces sp Acta 2897
Schubert V, Di Meo F, Saaidi PL, Bartoschek S, Fiedler HP, Trouillas P and Sussmuth RD
Novel metabolic features in Acinetobacter baylyi ADP1 revealed by a multiomics approach
Stuani L, Lechaplais C, Salminen AV, Segurens B, Durot M, Castelli V, Pinet A, Labadie K, Cruveiller S, Weissenbach J, de Berardinis V, Salanoubat M and Perret A
Quantitative proteomics using reductive dimethylation for stable isotope labeling
Tolonen AC and Haas W
Synthetic biology and society: the point of view of students who took part of the iGEM competition - a scientific's view
Cerisy T
The ModFOLD4 server for the quality assessment of 3D protein models
McGuffin LJ, Buenavista MT and Roche DB
The FunFOLD2 server for the prediction of protein-ligand interactions
Roche DB, Buenavista MT and McGuffin LJ
Nitrilase Activity Screening on Structurally Diverse Substrates: Providing Biocatalytic Tools for Organic Synthesis
Vergne-Vaxelaire C, Bordier F, Fossey A, Besnard-Gonnet M, Debard A, Mariage A, Pellouin V, Perret A, Petit JL, Stam M, Salanoubat M, Weissenbach J, De Berardinis V and Zaparucha A
Endogeic earthworms shape bacterial functional communities and affect organic matter mineralization in a tropical soil
Bernard L, Chapuis-Lardy L, Razafimbelo T, Razafindrakoto M, Pablo AL, Legname E, Poulain J, Bruls T, O'Donohue M, Brauman A, Chotte JL and Blanchart E
The Ectocarpus Genome and Brown Algal Genomics The Ectocarpus Genome Consortium
Cock JM, Sterck L, Ahmed S, Allen AE, Amoutzias G, Anthouard V, Artiguenave F, Arun A, Aury JM, Badger JH, Beszteri B, Billiau K, Bonnet E, Bothwell JH, Bowler C, Boyen C, Brownlee C, Carrano CJ, Charrier B, Cho GY, Coelho SM, Collen J, Le Corguille G, Corre E, Dartevelle L, Da Silva C, Delage L, Delaroque N, Dittami SM, Doulbeau S, Elias M, Farnham G, Gachon CMM, Godfroy O, Gschloessl B, Heesch S, Jabbari K, Jubin C, Kawai H, Kimura K, Kloareg B, Kuepper FC, Lang D, Le Bail A, Luthringer R, Leblanc C, Lerouge P, Lohr M, Lopez PJ, Macaisne N, Martens C, Maumus F, Michel G, Miranda-Saavedra D, Morales J, Moreau H, Motomura T, Nagasato C, Napoli CA, Nelson DR, Nyvall-Collen P, Peters AF, Pommier C, Potin P, Poulain J, Quesneville H, Read B, Rensing SA, Ritter A, Rousvoal S, Samanta M, Samson G, Schroeder DC, Scornet D, Segurens B, Strittmatter M, Tonon T, Tregear JW, Valentin K, Von Dassow P, Yamagishi T, Rouze P, Van de Peer Y, Wincker P and Consortium EG
Proteome Adaptation to High Temperatures in the Ectothermic Hydrothermal Vent Pompeii Worm
Jollivet D, Mary J, Gagniere N, Tanguy A, Fontanillas E, Boutet I, Hourdez S, Segurens B, Weissenbach J, Poch O and Lecompte O
Microbial urate catabolism: characterization of HpyO, a non-homologous isofunctional isoform of the flavoprotein urate hydroxylase HpxO
Michiel M, Perchat N, Perret A, Tricot S, Papeil A, Besnard M, de Berardinis V, Salanoubat M and Fischer C
Annotation of microsporidian genomes using transcriptional signals
Peyretaillade E, Parisot N, Polonais V, Terrat S, Denonfoux J, Dugat-Bony E, Wawrzyniak I, Biderre-Petit C, Mahul A, Rimour S, Goncalves O, Bornes S, Delbac F, Chebance B, Duprat S, Samson G, Katinka M, Weissenbach J, Wincker P and Peyret P
Genomic insights into strategies used by Xanthomonas albilineans with its reduced artillery to spread within sugarcane xylem vessels
Pieretti I, Royer M, Barbe V, Carrere S, Koebnik R, Couloux A, Darrasse A, Gouzy J, Jacques MA, Lauber E, Manceau C, Mangenot S, Poussier S, Segurens B, Szurek B, Verdier V, Arlat M, Gabriel DW, Rott P and Cociancich S
Surface-associated motility, a common trait of clinical isolates of Acinetobacter baumannii, depends on 1,3-diaminopropane
Skiebe E, de Berardinis V, Morczinek P, Kerrinnes T, Faber F, Lepka D, Hammer B, Zimmermann O, Ziesing S, Wichelhaus TA, Hunfeld KP, Borgmann S, Grobner S, Higgins PG, Seifert H, Busse HJ, Witte W, Pfeifer Y and Wilharm G
Prediction and identification of sequences coding for orphan enzymes using genomic and metagenomic neighbours
Yamada T, Waller AS, Raes J, Zelezniak A, Perchat N, Perret A, Salanoubat M, Patil KR, Weissenbach J and Bork P
Enterotypes of the human gut microbiome
Arumugam M, Raes J, Pelletier E, Le Paslier D, Yamada T, Mende DR, Fernandes GR, Tap J, Bruls T, Batto JM, Bertalan M, Borruel N, Casellas F, Fernandez L, Gautier L, Hansen T, Hattori M, Hayashi T, Kleerebezem M, Kurokawa K, Leclerc M, Levenez F, Manichanh C, Nielsen HB, Nielsen T, Pons N, Poulain J, Qin JJ, Sicheritz-Ponten T, Tims S, Torrents D, Ugarte E, Zoetendal EG, Wang J, Guarner F, Pedersen O, de Vos WM, Brunak S, Dore J, Weissenbach J, Ehrlich SD, Bork P and Meta HITC
Nature 473 (7346), 174-180, 2011
Bellinzoni M, Bastard K, Perret A, Zaparucha A, Perchat N, Vergne C, Wagner T, de Melo-Minardi RC, Artiguenave F, Cohen GN, Weissenbach J, Salanoubat M and Alzari PM
Journal of Biological Chemistry 286 (31), 27399-27405, 2011
The human metagenome: our other genome?
Bruls T and Weissenbach J
Human Molecular Genetics 20 (), R142-R148, 2011
A Novel Acyl-CoA Beta-Transaminase Characterized from a Metagenome
Perret A, Lechaplais C, Tricot S, Perchat N, Vergne C, Pelle C, Bastard K, Kreimeyer A, Vallenet D, Zaparucha A, Weissenbach J and Salanoubat M
PLoS ONE 6 (8), , 2011
Extensive synteny conservation of holocentric chromosomes in Lepidoptera despite high rates of local genome rearrangements
d'Alencon E, Sezutsu H, Legeai F, Permal E, Bernard-Samain S, Gimenez S, Gagneur C, Cousserans F, Shimomura M, Brun-Barale A, Flutre T, Couloux A, East P, Gordon K, Mita K, Quesneville H, Fournier P and Feyereisen R
Proceedings of the National Academy of Sciences of the United States of America 107 (17), 7680-7685, 2010
Clostridium sticklandii, a specialist in amino acid degradation: revisiting its metabolism through its genome sequence
Fonknechten N, Chaussonnerie S, Tricot S, Lajus A, Andreesen JR, Perchat N, Pelletier E, Gouyvenoux M, Barbe V, Salanoubat M, Le Paslier D, Weissenbach J, Cohen GN and Kreimeyer A
Bmc Genomics 11 (), 555, 2010
A Genetic Model for the Female Sterility Barrier Between Asian and African Cultivated Rice Species
Garavito A, Guyot R, Lozano J, Gavory F, Samain S, Panaud O, Tohme J, Ghesquiere A and Lorieux M
Genetics 185 (4), 1425-U439, 2010
Evolution of Hox Gene Clusters in Gnathostomes: Insights from a Survey of a Shark (Scyliorhinus canicula) Transcriptome
Oulion S, Debiais-Thibaud M, d'Aubenton-Carafa Y, Thermes C, Da Silva C, Bernard-Samain S, Gavory F, Wincker P, Mazan S and Casane D
Molecular Biology and Evolution 27 (12), 2829-2838, 2010
Analysis of Virion Structural Components Reveals Vestiges of the Ancestral Ichnovirus Genome
Volkoff AN, Jouan V, Urbach S, Samain S, Bergoin M, Wincker P, Demettre E, Cousserans F, Provost B, Coulibaly F, Legeai F, Beliveau C, Cusson M, Gyapay G and Drezen JM
Plos Pathogens 6 (5), e1000923, 2010
Polydnaviruses of Braconid Wasps Derive from an Ancestral Nudivirus
Bezier A, Annaheim M, Herbiniere J, Wetterwald C, Gyapay G, Bernard-Samain S, Wincker P, Roditi I, Heller M, Belghazi M, Pfister-Wilhem R, Periquet G, Dupuy C, Huguet E, Volkoff AN, Lanzrein B and Drezen JM
Science 323 (5916), 926-930, 2009
Symbiotic Virus at the Evolutionary Intersection of Three Types of Large DNA Viruses, Iridoviruses, Ascoviruses, and Ichnoviruses
Bigot Y, Renault S, Nicolas J, Moundras C, Demattei MV, Samain S, Bideshi DK and Federici BA
Plos One 4 (7), 9, 2009
Acinetobacter baylyi ADP1 as a model for metabolic system biology
de Berardinis V, Durot M, Weissenbach J and Salanoubat M
Current Opinion in Microbiology 12 (5), 568-576, 2009
Global expression analysis of the brown alga Ectocarpus siliculosus (Phaeophyceae) reveals large-scale reprogramming of the transcriptome in response to abiotic stress
Dittami SM, Scornet D, Petit JL, Segurens B, Da Silva C, Corre E, Dondrup M, Glatting KH, Konig R, Sterck L, Rouze P, Van de Peer Y, Cock JM, Boyen C and Tonon T
Genome Biology 10 (6), 51, 2009
A Conserved Gene Cluster Rules Anaerobic Oxidative Degradation of L-Ornithine
Fonknechten N, Perret A, Perchat N, Tricot S, Lechaplais C, Vallenet D, Vergne C, Zaparucha A, Le Paslier D, Weissenbach J and Salanoubat M
Journal of Bacteriology 191 (9), 3162-3167, 2009
Features of the ancestral bilaterian inferred from Platynereis dumerilii ParaHox genes
Hui JHL, Raible F, Korchagina N, Dray N, Samain S, Magdelenat G, Jubin C, Segurens B, Balavoine G, Arendt D and Ferrier DEK
Bmc Biology 7 (), 13, 2009
The complete genome sequence of Xanthomonas albilineans provides new insights into the reductive genome evolution of the xylem-limited Xanthomonadaceae
Pieretti I, Royer M, Barbe V, Carrere S, Koebnik R, Cociancich S, Couloux A, Darrasse A, Gouzy J, Jacques MA, Lauber E, Manceau C, Mangenot S, Poussier S, Segurens B, Szurek B, Verdier V, Arlat M and Rott P
Bmc Genomics 10 (), 15, 2009
The Dogfish Scyliorhinus canicula: A Reference in Jawed Vertebrates
Coolen M, Menuet A, Chassoux D, Compagnucci C, Henry S, Leveque L, Da Silva C, Gavory F, Samain S, Wincker P, Thermes C, D'Aubenton-Carafa Y, Rodriguez-Moldes I, Naylor G, Depew M, Sourdaine P and Mazan S
CSH protocols 2008 (), pdb.emo111, 2008