n° Citations: 754; h-index: 10; i10-index: 12 (November 2018)
2018
- Lucas Fauquier, Karim Azzag, Marco Antonio Mendoza Parra, Aurélie Quillien, Manon Boulet, Sarah Diouf, Gilles Carnac, Lucas Waltzer, Hinrich Gronemeyer & Laurence Vandel; CBP and P300 regulate distinct gene networks required for human primary myoblast differentiation and muscle integrity; Scientific Reports; 2018 August 22.
- Pierre-Etienne Cholley, Julien Moehlin, Alexia Rohmer, Vincent Zilliox, Samuel Nicaise, Hinrich Gronemeyer and Marco Antonio Mendoza-Parra; Modeling gene-regulatory networks to describe cell fate transitions and predict master regulators; Nature Systems Biology & Applications; 2018 August 2.
- Shinya Fujii, Shuichi Mori, Hiroyuki Kagechika, Marco Antonio Mendoza Parra and Hinrich Gronemeyer; Development of biotin-retinoid conjugates as chemical probes for analysis of retinoid function; Bioorganic & Medicinal Chemistry Letters; 2018 June 6.
- Maja Milanovic, Dorothy N.Y. Fan, Dimitri Belenki, J. Henry M. Däbritz, Zhen Zhao, Yong Yu, Jan R. Dörr, Lora Dimitrova, Dido Lenze, Ines A. Monteiro Barbosa, Marco A. Mendoza-Parra, Tamara Kanashova, Marlen Metzner, Katharina Pardon, Maurice Reimann, Andreas Trumpp, Bernd Dörken, Johannes Zuber, Hinrich Gronemeyer, Michael Hummel, Gunnar Dittmar, Soyoung Lee and Clemens A. Schmitt; Senescence-associated reprogramming promotes cancer stemness; Nature; 2018 Jan 4;553 (7686):96-100.
2017
- MAM Saleem, Marco Antonio Mendoza-Parra, PE Cholley, M Blum and Hinrich Gronemeyer; Epimetheus: a multi-profile normalizer for epigenomic sequencing data; BMC Bioinformatics; 12 May 2017, 18 (1), 259.
2016
- Marco Antonio Mendoza-Parra, Valeriya Malysheva, Mohamed Ashick Mohamed Saleem, Michele Lieb, Aurelie Godel and Hinrich Gronemeyer; Reconstructed cell fate-regulatory programs in stem cells reveal hierarchies and key factors of neurogenesis; Genome Research; 20 September 2016, 26 (11), 1505-1519.
- Valeriya Malysheva, Marco Antonio Mendoza-Parra, Mohamed Ashick Mohamed Saleem and Hinrich Gronemeyer; Reconstructing gene regulatory networks of tumorigenesis; Genome Medicine; 19 May 2016, 8 (1), 57.
- Marco Antonio Mendoza-Parra, Matthias Blum, Valeriya Malysheva, Pierre-Etienne Cholley and Hinrich Gronemeyer; LOGIQA: A database dedicated to Long-range Genome Interactions Quality Assessment; BMC Genomics; 16 May 2016, 17 (1), 355.
- Marco A. Mendoza-Parra, Mohamed Saleem MA, Matthias Blum, Pierre-Etienne Cholley and Hinrich Gronemeyer; NGS-QC Generator: A Quality control system for ChIP-seq and related deep sequencing-generated datasets; Statistical Genomics: Methods and Protocols; Springer Book Series; 24 March 2016; Volume 1418; pp 243-65.
- Marco Antonio Mendoza-Parra, Vincent Saravaki, Pierre-Etienne Cholley, Matthias Blum, Benjamin Billoré and Hinrich Gronemeyer; Antibody performance in ChIP-sequencing assays: From quality scores of public data sets to quantitative certification; F1000Research; 12 January 2016; 5:14; doi: 10.12688/f1000research.7637.2
2015
- Marco Antonio Mendoza-Parra, and Hinrich Gronemeyer, Systems biology approaches to uncover the function of RAR and RXR subtypes and of selective ligands in gene regulation during cell lineage specification, The Retinoids: Biology, Biochemistry and Disease" (Wiley-Blackwell publisher Book Series); May 2015. pp 165-192.
- Ronan Chaligné, Tatiana Popova, Marco Antonio Mendoza Parra, Mohamed Ashick Mohamed Saleem, David Gentien, Kristen Ban, Tristan Piolot, Olivier Leroy, Odette Mariani, Hinrich Gronemeyer, Anne Vincent-Salomon, Marc-Henri Stern and Edith Heard; The inactive X chromosome is epigenetically unstable and transcriptionally labile in breast cancer; Genome Research; 2015 Apr, 25(4): 488-503.
2014
- Marco A. Mendoza-Parra and Hinrich Gronemeyer; Assessing quality standards for ChIP-seq and related massive parallel sequencing-generated datasets: When rating goes beyond avoiding the crisis; Genomics Data; Dec. 2014; vol. 2, pages 268-273.
- Jelena Vjetrovic, Pattabhiraman Shankaranarayanan, Marco A. Mendoza-Parra and Hinrich Gronemeyer; Senescence-secreted factors activate Myc and sensitize pretrasformed cells to TRAIL-induced apoptosis; Aging Cell; 2014 June; 13(3):487-96; doi: 10.1111/acel.12197.
- Marco Antonio Mendoza-Parra, and Hinrich Gronemeyer, Integrative genomics to dissect retinoids functions, The Biochemistry of Retinoic Acid Receptors I: Structure, Activation and Function at the Molecular Level; Subceullar Biochemistry; Springer Book Series; 25th June 2014; Volume 70, pp 181-202.
2013
- Marco Antonio Mendoza-Parra, Wouter Van Gool, Mohamed Saleem MA, Danilo Guillermo Ceschin and Hinrich Gronemeyer; A quality control system for profiles obtained by massive parallel sequencing; Nucleic Acid Research; 2013 Nov 1; 41(21):e196. doi: 10.1093/nar/gkt829. (PATENTED)
- Marco Antonio Mendoza-Parra, Malgorzata Nowicka, Wouter Van Gool and Hinrich Gronemeyer; Characterising ChIP-seq binding patterns by model-based peak shape deconvolution; BMC Genomics; 2013 Nov.26; 14(1): 834. doi: 10.1186/1471-2164-14-834.
- Marco Antonio Mendoza-Parra, and Hinrich Gronemeyer, Genome-wide studies of nuclear receptors in cell fate decisions, Review journal "Seminars in Cell and Developmental Biology", Thematic issue: Nuclear receptors and cell differentiation, pluripotency, development and stem cells; 2013 Dec; 24 (10-12): 706-15.